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The percolation method we are using is very painful. The bottleneck is the `restrict` function in `bdd.py` (part of `pyeda`). I wonder, is there is a better way to do this? Currently, `pystablemotifs`…
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**Describe the bug**
I am trying to run scenicplus on a Pig dataset. I have generated motif scores following the steps in `create_cisTarget_databases` `. I had to make multiple changes in the codeb…
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**Submitting author:** @narnolddd (Naomi Arnold)
**Repository:** https://github.com/Pometry/Raphtory
**Branch with paper.md** (empty if default branch): paper
**Version:** 0.7.0
**Editor:** @luizirbe…
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Please provide as much information as you can:
* **Suggested term label:**
symbiont-mediated perturbation of vesicle-mediated transport
* **Definition (free text)**
* **Reference, in form…
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https://merenlab.org/2015/05/01/installation-v1/#installation-for-developers-youre-a-wizard-arry
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### Title
Automatic detection of spiking motifs in neurobiological data
### Leaders
- [Matthieu Gilson](https://matthieugilson.eu) - https://github.com/MatthieuGilson
- [Laurent Perrinet](ht…
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Dear Lingfei,
I have tried to add the number to distinguish each motif name as you suggested in https://github.com/pinellolab/dictys/issues/28. However the same error still occured. I also tried d…
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**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.5/docs/FAQ.md**:
Yes.
**Describe the issue:**
I followed the [PACBIO example](https://github.com/google/deepvariant/bl…
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Because the [issue](https://github.com/benedekrozemberczki/EdMot/issues/1) was closed.
I think his 2nd question discussed here is talk about the pre-partition procedure in this algorithm.
It's m…
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**Checks before submitting the issue**
* [x] I installed the latest Dictys version successfully
* [X] I downloaded the whole folder for the tutorial
* [X] I ran the tutorial cells and notebooks (if…