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Re: https://github.com/x-atlas-consortia/hs-ontology-api/pull/138
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In **FHIR** a `ValueSet` resource can contain concepts from multiple code systems (represented as `CodeSystem` resource) and even concepts multiple versions of the same code system. The **Ontology Gen…
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- [ ] pytests for different kinds of ontology failure classes (dns issue, http error, empty file, etc.)
- [ ] #113
- [ ] Large-scale test for all archivo ontologies (requesting every ontology in dif…
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Raised by @jonquet in Slack and GitHub after, submitting and experimenting with the AGROTERMOS ontology
### Issues
- [ ] * https://github.com/agroportal/project-management/issues/515
- [x] * ht…
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The main ontology list (ontologylist.tsv) includes MEDDRA, but it is not populated in the output stats, even as a failed transform.
The metadata page resolves: https://data.bioontology.org/ontologies…
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**Describe the bug**
The **_BFO_** ontology badge of the property **_realized in_** is clickable but leads to an error. The reason for this is that the property **_realized in_** is not in the BFO O…
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Dear all,
The proposal has been made to obsolete
GO:0044349 DNA excision
GO:0000718 nucleotide-excision repair, DNA damage removal
see https://github.com/geneontology/go-ontology/issues/29220
…
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## Description of the issue
Not all ontology files contain the same set of prefixes. For example, `dct` is used in oeo.omn, but not in the module files.
## Ideas of solution
Harmonise prefixe…
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IT would be interesting to auto-generate a plot for the readme that summarizes the source ontologies that we are building on.
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I am using openllet to infer axioms given an ontology and I think there is an axiom missing in some cases. I am not 100% sure if the axiom should be inferred, but HermiT does infer the "missing" equiv…