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Analogous to the TransE visualization, but this time with CBOW (first order random walk sampling).
![image](https://user-images.githubusercontent.com/7738570/170890301-461f79c4-4900-49ab-9f6e-7bc3d…
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Hello,
I have run FastOMA on about 2200 genomes. The inference of HOGs finished all right (with some tweaks in the resource config), however the `fastoma_report` step failed as it consumes a very l…
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- [ ] Special topic on optimization by Dr. Heng Li @liheng0407
- [ ] Chapter 5 Panda study led by Lei Xiao @radium05
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Dear openmm developers,
Recently, we wrote a protcol to run membrane protein using openmm and CHARMM as force fiels. We generally, build and obtain topology, and psf,/pdb using a combination of htm…
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Extending https://github.com/sourmash-bio/sourmash/issues/1750, I am copying a conversation between @ctb and @drtamermansour to be detailed later into tasks.
Slack Conversation
Tamer Mansour…
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Hi Francisco,
Thanks so much for taking the time to develop these great tutorials.
In my project I am comparing two groups of species (Entero co-colonizers vs co-excluders) and have identified a…
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I recently had a discussion with Adam Hospital about making the OPTIMADE standard suitable for biomolecular data.
The most important data to share, that is not standard in Optimade, would be:
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### Background
A biological pathway is a network consisting of interactions between biological molecules (e.g. proteins and chemicals) in a cell that lead to a certain product or a change. Research…
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Hi, scanpy team!
I am trying to understand if `scanpy.pl.spatial` would support using the fullres histology image. E.i. if it supports `img_key = 'fullres` where it would pull the image from 'fullr…
vitkl updated
3 years ago
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Thanks for your book! The figures are amazing.
Since I am working in 3D and have to play around with point clouds a lot, I really want to know how the 'Scatter-3D' exmaple is made.
It seems the core…