dib-lab kProcessor issues

dib-lab / kProcessor

kProcessor: kmers processing framework.

https://kprocessor.readthedocs.io

BSD 3-Clause "New" or "Revised" License

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issues

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Convert KP V1 hashmap to parallel hashmap

#103 mr-eyes closed 2 years ago
0
Consider a simple optimization to kProcessor 1

#102 mr-eyes closed 2 years ago
1
kProcessor v2 is not compiling

#101 mr-eyes opened 2 years ago
0
Conversion to MQF enters an infinite loop

#100 mr-eyes closed 2 years ago
4
update kmerDecoder

#99 mr-eyes closed 2 years ago
12
Problem in updating parallel_hashmap in v2

#98 mr-eyes closed 2 years ago
2
`kProcessor::indexPriorityQueue()` does not fill/save the `namesMap`.

#97 mr-eyes opened 2 years ago
0
v2 `createMQF()` entered infinite loop

#96 mr-eyes opened 2 years ago
0
Can't convert phmap with murmur kmers to mqf

#95 mr-eyes opened 2 years ago
0
kDataFrameIterator invalidated if `erase`

#94 mr-eyes opened 2 years ago
0
[MRG] Update kProcessor v1 docs & fix some bugs

#93 mr-eyes closed 2 years ago
1
Easy way to retrieve the groupNames associated with kmer's color?

#92 mr-eyes opened 2 years ago
0
The function getKmerRow should be obsolete

#91 drtamermansour opened 2 years ago
0
kProcessor/kSpider/sourmash thoughts for downsampling/containment matrix

#90 mr-eyes opened 2 years ago
4
little edit to the interface

#89 shokrof opened 2 years ago
0
kDifferentialExpression usecase isn't working

#88 mr-eyes opened 2 years ago
1
[WIP] V2 Python wrapper

#87 mr-eyes closed 2 years ago
1
kProcessor interface

#86 shokrof opened 2 years ago
3
[WIP] Restriction tags

#85 mr-eyes opened 3 years ago
0
[WIP] Update v2 documentation

#84 drtamermansour opened 3 years ago
0
Intermediate files in the testing

#83 shokrof opened 3 years ago
0
kmerDecoder migration

#82 mr-eyes closed 3 years ago
1
names file parsing error

#81 mr-eyes opened 3 years ago
0
[WIP] Fix reading/hashing modes

#80 mr-eyes closed 3 years ago
0
kDataFrame doesn't process other kmerDecoder modes correctly

#79 mr-eyes closed 3 years ago
1
CMAKE versions restriction

#78 mr-eyes opened 3 years ago
0
[WIP] kProcessor v1.1 Release

#77 mr-eyes closed 3 years ago
0
kProcessor::index() is failing

#76 mr-eyes closed 3 years ago
6
DiffExp usecase issue

#75 mr-eyes closed 3 years ago
1
[WIP] New Release v2

#74 mr-eyes opened 3 years ago
2
Support multiple fasta/names files

#73 mr-eyes opened 3 years ago
0
kmer counting using buffered kDataframe

#72 shokrof opened 4 years ago
0
kDataframe PHMAP

#71 shokrof opened 4 years ago
4
refactor Index functions using the column concept

#70 shokrof closed 4 years ago
0
Pandas Interface for KDataframes

#69 shokrof opened 4 years ago
1
Fix PHMAP search in getCount()

#68 mr-eyes closed 4 years ago
0
kDataFrameMQF false returned size()

#67 mr-eyes opened 4 years ago
0
Implement RHS for kdataframe

#66 shokrof opened 4 years ago
0
Transform between kDataframes

#65 shokrof opened 4 years ago
0
multi column swig interface and documentation

#64 shokrof closed 4 years ago
0
Circos Plotting

#63 shokrof opened 4 years ago
1
Dendogram plotting

#62 shokrof opened 4 years ago
0
Venn Diagram Plotting

#61 shokrof opened 4 years ago
0
PCA and plot using Matplotlib

#60 shokrof opened 4 years ago
0
Histograms using Matplotib

#59 shokrof opened 4 years ago
0
Pandas Convertor

#58 shokrof opened 4 years ago
0
Plot from C++

#57 shokrof opened 4 years ago
0
Merge Indexes

#56 shokrof opened 4 years ago
0
kmerCounting Frog

#55 shokrof opened 4 years ago
0
Kmer counting using MQF

#54 shokrof opened 4 years ago
0