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Hi,
please see the following crash report:
MetaMorpheus: version 0.0.304
Data files were processed on a VMware, Inc. VMware7,1 computer using Windows version 6.2.9200.0 with a 64-Bit processor an…
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Hi again,
when trying to load my SearchGUI results using:
```
java -Xmx112G -cp /mnt/lscratch/users/ohickl/proteomics/engines/PeptideShaker-2.0.0-beta/PeptideShaker-2.0.0-beta.jar eu.isas.peptide…
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Hello,
It seems that PeptideMapper reindexes a fasta file every time it is searched. Is this correct? And if so, is it intended?
Thanks,
Andrew
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Dear Philosopher team,
Thank you for your very helpful tools!
I am trying to process some comet searches I did before I knew of Philosopher, but I used the Comet decoy = 1 setting where decoy …
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Hi,
I am trying to analyze the proteomics data from tims tof pro.
I have used *.mgf files to run in MS fragger (both with fragpipe and proteome discoverer node)
Both of them failed to read the …
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@hbarsnes @mvaudel @StSchulze
We have continued working with the metadata experimental design.
See example, https://github.com/PRIDE-Archive/pride-metadata-standard/tree/master/experimental-des…
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Hello everyone,
After ProteinProphet starts I get the following warning: no data - output file will be empty (but see the log file). The remaining tasks are then stopped.
I was wondering what I …
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# Describe the problem
* **I'm submitting a:**
- [ x] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [ x] _Close…
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# Describe the problem
I’ve been running MSFragger on FragPipe. Close searches works fine but it kept erroring out with open searches and at the Crystal-C step. I’ve attached the log file and was hop…
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# Describe the problem
I am running fragpipe on windows 10 and after starting the run, I get an error
* **I'm submitting a:**
- [x ] problem running the software
- [ ] bug report
- [ ] fe…