-
The log output is written in a way that TVP cannot consume.
Other tools from the same package may also need the same update.
- [ ] toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_mak…
-
### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
veghp updated
3 weeks ago
-
Hello,
I want to obtain a fasta file containing only those sequences classified as 16S. I noticed that rRNA sensor creates an outpup fasta file with the sequences that satisfy the length threshold,…
-
Issue linked to #76 and testing the `riboviz.tools.upgrade_config_file` tool from riboviz 2.1.
I used the command `python -m riboviz.tools.upgrade_config_file -i ../example-datasets/fungi/saccharom…
-
Hi!
I have rRNA depleted total RNA-Seq reads obtained using below kits. Can I use these to identify all AS events? (I am getting SEs and MXEs and no other as events using rMATS.) Is there any speci…
-
URS000075D341_9606 and URS00021ED94B_9606 are both human 5.8S rRNA sequences that differ only by a single nt (the first is 1nt longer than the second) but their secondary structure diagrams look very …
-
Is the error because there is no difference between mouse datasets?
No id variables; using all as measure variables
out of 4725 with nonzero total read count
adjusted p-value < 0.1
LFC > 0 (u…
-
Hi,
I'm trying to run the workflow, but it fails at building the metacells with the following error(truncated):
```
Error in `$
-
Hello Martin,
In your paper it is stated that ARIBA...."4) identifies SNP frequency in multicopy genes, which has been traditionally difficult to resolve due to the complexities of de novo assembl…
-
It would be good for users to have an easy way to turn markers on and off when running PhyloSift. I suggest we could do this as command line flags, because I think people will get annoyed if they have…