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Greetings,
I am interested in trying the LTR_retriever strategy to validate hits I obtained from an LTRharvest dataset. I downloaded the files associated with LTR_retriever and modified the "paths"…
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Hello,
I have compiled this and it is running but I get a "kill" result on Step 1 and the log last lines reads "TRF output lines processed 32481800". The mail at the bu web site is inop.
When…
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In many assemblies we are finding that assembly graph contiguity is not much higher than that of contigs extracted from it. This is true not just for miniasm but also other assemblers.
Why might th…
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## Expected Behavior
`cwl:source` predicates exist to define the links between steps
## Actual Behavior
No such links are present so steps are disconnected:
. Currently we are in the process of adding support for repeat expansions or short tandem repeats. We observe…
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Hi Shujun,
I was wondering if it's expected that there are many short sequences in ~.LTRlib.fa? Of the 8424 entries, 81 are 11 bp long, and 542 are less than 100 bp long.
Also, is ~.LTRlib.fa th…
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Kibana Globalization
====================
**Note: These requirements were originally written up over a year ago. Take any specific implementation details with a grain of salt. Phases that were alr…
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First of all thank you for the amazing piece of software!
I am trying to use version 2.5.6.
Sometimes the "final assembly" - either from Contigs.. or Circularized... files do not have anything in co…