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lh3
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miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
MIT License
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Minidot invalid option -- 'D'
#95
JKing2000
opened
1 month ago
0
Next Step after generating assembly.gfa file.
#94
UmerFarooq17
opened
5 months ago
0
Update PAF.md regarding the target interval
#93
pesho-ivanov
opened
6 months ago
0
Assemble of DNA and RNA amplicons from PacBio run
#92
s-t-calus
closed
1 year ago
1
Branch for GPU parallelization
#91
GANTR0N
closed
1 year ago
0
combine replicates
#90
mbartl13
opened
1 year ago
0
The main disadvantages of Miniasm compared to more modern assemblers
#89
shelkmike
opened
2 years ago
0
Empty paf file. No error message.
#88
Yang-Wang-2020
closed
3 years ago
0
Not results generating?
#87
sekhwal
opened
4 years ago
4
PAF Format detail
#86
sd880131
closed
4 years ago
1
Miniasm killed process
#85
vilperte
opened
4 years ago
0
Decreasing minimum required read coverage for assembly
#84
chocotwig
opened
4 years ago
0
Empty gfa file after miniasm run
#83
aastha-v
opened
4 years ago
4
prints a warning if the read file cannot be opened
#82
rchikhi
opened
4 years ago
0
typo in README command
#81
rchikhi
opened
4 years ago
2
fix command line flag to match help (-d -> -D)
#80
cmdoret
opened
4 years ago
0
Conceptual Question About Miniasm
#79
chocotwig
opened
4 years ago
0
miniasm prints no gfa if PAF file contains self-mapped read
#78
vellamike
opened
4 years ago
3
Number of rounds for short overlap removal
#77
snurk
opened
4 years ago
0
Hello there,
#76
shehongbing
opened
4 years ago
3
Can miniasm be used for contigs
#75
SilasK
opened
4 years ago
1
Explicitly add circularising links to unitig GFA
#74
rrwick
closed
4 years ago
3
Segmentation fault (core dumped) while running miniasm
#73
ShuChen1986
opened
4 years ago
1
PAF end coordinates
#72
johnomics
closed
4 years ago
2
Explanation of GFA file format
#71
nhartwic
opened
4 years ago
1
No output in GFA file after miniasm run.
#70
tayabsoomro
closed
4 years ago
4
how to calculated identity?
#69
LinXialab
closed
5 years ago
1
using a fragmented genome as an input
#68
dcopetti
opened
5 years ago
0
Quality scores during mapping
#67
ardakdemir
closed
5 years ago
2
miniasm stop at step1 and error with 段错误(吐核)(core dump)
#66
y842739756
opened
5 years ago
0
miniasm output with NNNN's
#65
GeoMicroSoares
opened
5 years ago
3
nanopore output files: demultiplexed or non
#64
oatesa
opened
5 years ago
0
Coverage per contig?
#63
cjchen5
opened
5 years ago
0
Performing local assembly with only a few number of reads
#62
OscarAspelin
opened
5 years ago
3
GFA with '*' sequences
#61
sage-wright
opened
5 years ago
2
minimap2 + miniasm + racon pipeline produces bigger genome assembly than expected
#60
MehmetGoktay
opened
5 years ago
1
assembly for multiple fastq files
#59
xingjianfeng100
opened
5 years ago
0
explanation of GFA output
#58
lfaino
opened
5 years ago
1
minidot can't plot right
#57
ghost
opened
5 years ago
0
empty gfa with "0 sequences and 0 hits remain after containment removal"
#56
JustinaMoon
opened
5 years ago
4
miniasm error
#55
Xuelei-Dai
opened
5 years ago
0
max divergence optimization
#54
EarlyEvol
opened
5 years ago
0
Minimap or Minimap2
#53
jjkoehorst
closed
5 years ago
4
miniasm output with 0 with test data
#52
ljw90607
opened
5 years ago
0
Do you keep on tagging releases
#51
tillea
closed
5 years ago
2
No output of Minisam?
#50
HuJane
opened
6 years ago
8
Working with corrected Nanopore reads?
#49
moold
closed
5 years ago
1
miniasm segmentation fault
#48
imneuro
opened
6 years ago
8
empty .gfa
#47
Raistrawby
opened
6 years ago
1
How to estimate computational resource?
#46
imneuro
opened
6 years ago
0
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