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lh3
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miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
MIT License
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No sequences in gfa - unable to convert to fasta
#45
lpryszcz
closed
6 years ago
1
Reassembling polished unitigs with the raw reads
#44
sjackman
opened
6 years ago
0
Please tag a stable release
#43
sjackman
closed
5 years ago
5
Add read count (RC) attribute to GFA [feature request]
#42
sjackman
opened
6 years ago
2
Unitig id suffix 'l' vs 'c'
#41
audrina
opened
6 years ago
1
High scoring segment pairs
#40
rehab-fouad
closed
6 years ago
5
Color output
#39
jflot
opened
6 years ago
0
Can minimap and miniasm be used for human genome assembly?
#38
SiyangLiu
closed
6 years ago
1
Assembling mixtures of PacBio and Nanopore reads
#37
jflot
opened
6 years ago
1
Segmentation fault
#36
wangzhennan14
opened
6 years ago
8
Repeat masking
#35
mictadlo
opened
6 years ago
0
Error message when providing wrong filenames
#34
Kirk3gaard
opened
6 years ago
0
improving assembly graph contiguity ("connected component N50")
#33
ekg
closed
6 years ago
17
miniasm seems to not work with minimap2 -x ava-ont PAF files of latest minimap2 version?
#32
RaverJay
closed
6 years ago
6
multithreaded
#31
jdmontenegro
closed
6 years ago
1
genomes longer than 100MB
#30
hermeseduardo
opened
6 years ago
0
minidot plot in specific order
#29
jregalad
opened
6 years ago
0
check file handle from paf_open exists
#28
mcshane
closed
6 years ago
0
Core Dumped while Generating Unitigs
#27
judzen
opened
6 years ago
7
failed at index.c
#26
xthua
opened
7 years ago
0
Short read lengths - genome assembly
#25
anmwinter
opened
7 years ago
0
miniasm: asm.c:267: ma_ug_seq: Assertion `sub[id].e - sub[id].s <= ks->seq.l' failed.
#24
mictadlo
closed
7 years ago
5
only merge read selection passes when both enabled
#23
rikuu
closed
7 years ago
0
Miniasm outputs genome with 100% Ns
#22
PedroBarbosa
closed
6 years ago
0
Miniasm not making it past Step 1
#21
dbrowneup
opened
7 years ago
2
miniasm over corrected long reads
#20
ythuang0522
closed
7 years ago
1
Segmentation fault at step 1
#19
LeandroRitter
opened
7 years ago
4
layout step produces empty gfa
#18
aechchiki
closed
7 years ago
7
What are the usage parameter of miniasm for aligning a reference.fasta and a PAF file?
#17
MKGAURAB
closed
7 years ago
1
Parameter tweaking for assembling error-corrected reads
#16
suryasaha
closed
7 years ago
4
sam2paf javascript code
#15
cjain7
closed
8 years ago
2
GFA usage help
#14
abayega
opened
8 years ago
1
GFA file input to Bandage
#13
suryasaha
closed
8 years ago
1
Core Dump error while generating unitigs(Step 5)
#12
athulmenon
opened
8 years ago
4
assembling canu corrected reads
#11
laurencowley
closed
8 years ago
7
Document GFA `a` record
#10
sjackman
closed
8 years ago
2
fixed an integer overflow
#9
voutcn
closed
3 weeks ago
0
output string graph in GFA format
#8
ekg
closed
8 years ago
2
Segmentation fault happened at step3
#7
wen-biao
closed
7 years ago
9
Assertion error
#6
levinas
closed
8 years ago
3
assembling short references
#5
ekg
opened
8 years ago
7
bad gateway for test data
#4
ekg
closed
8 years ago
3
miniasm for large genome with daligner overlaps
#3
MichelMoser
opened
8 years ago
16
P6C4 devnet: Assertion error
#2
lexnederbragt
closed
8 years ago
2
Add version flag -V
#1
tseemann
closed
8 years ago
1
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