lh3 miniasm issues - Githubissues

lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

MIT License

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issues

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Minidot invalid option -- 'D'

#95 JKing2000 opened 1 month ago
0
Next Step after generating assembly.gfa file.

#94 ufaroooq opened 5 months ago
0
Update PAF.md regarding the target interval

#93 pesho-ivanov opened 7 months ago
0
Assemble of DNA and RNA amplicons from PacBio run

#92 s-t-calus closed 1 year ago
1
Branch for GPU parallelization

#91 GANTR0N closed 1 year ago
0
combine replicates

#90 mbartl13 opened 1 year ago
0
The main disadvantages of Miniasm compared to more modern assemblers

#89 shelkmike opened 2 years ago
0
Empty paf file. No error message.

#88 Yang-Wang-2020 closed 3 years ago
0
Not results generating?

#87 sekhwal opened 4 years ago
5
PAF Format detail

#86 sd880131 closed 4 years ago
1
Miniasm killed process

#85 vilperte opened 4 years ago
0
Decreasing minimum required read coverage for assembly

#84 chocotwig opened 4 years ago
0
Empty gfa file after miniasm run

#83 aastha-v opened 4 years ago
4
prints a warning if the read file cannot be opened

#82 rchikhi opened 4 years ago
0
typo in README command

#81 rchikhi opened 4 years ago
2
fix command line flag to match help (-d -> -D)

#80 cmdoret opened 4 years ago
0
Conceptual Question About Miniasm

#79 chocotwig opened 4 years ago
0
miniasm prints no gfa if PAF file contains self-mapped read

#78 vellamike opened 4 years ago
3
Number of rounds for short overlap removal

#77 snurk opened 4 years ago
0
Hello there,

#76 shehongbing opened 4 years ago
3
Can miniasm be used for contigs

#75 SilasK opened 4 years ago
1
Explicitly add circularising links to unitig GFA

#74 rrwick closed 4 years ago
3
Segmentation fault (core dumped) while running miniasm

#73 ShuChen1986 opened 4 years ago
1
PAF end coordinates

#72 johnomics closed 5 years ago
2
Explanation of GFA file format

#71 nhartwic opened 5 years ago
1
No output in GFA file after miniasm run.

#70 tayabsoomro closed 5 years ago
4
how to calculated identity?

#69 LinXialab closed 5 years ago
1
using a fragmented genome as an input

#68 dcopetti opened 5 years ago
0
Quality scores during mapping

#67 ardakdemir closed 5 years ago
2
miniasm stop at step1 and error with 段错误(吐核)(core dump)

#66 y842739756 opened 5 years ago
0
miniasm output with NNNN's

#65 GeoMicroSoares opened 5 years ago
3
nanopore output files: demultiplexed or non

#64 oatesa opened 5 years ago
0
Coverage per contig?

#63 cjchen5 opened 5 years ago
0
Performing local assembly with only a few number of reads

#62 OscarAspelin opened 5 years ago
3
GFA with '*' sequences

#61 sage-wright opened 5 years ago
2
minimap2 + miniasm + racon pipeline produces bigger genome assembly than expected

#60 MehmetGoktay opened 5 years ago
1
assembly for multiple fastq files

#59 xingjianfeng100 opened 5 years ago
0
explanation of GFA output

#58 lfaino opened 5 years ago
1
minidot can't plot right

#57 ghost opened 5 years ago
0
empty gfa with "0 sequences and 0 hits remain after containment removal"

#56 JustinaMoon opened 5 years ago
4
miniasm error

#55 Xuelei-Dai opened 5 years ago
0
max divergence optimization

#54 EarlyEvol opened 6 years ago
0
Minimap or Minimap2

#53 jjkoehorst closed 6 years ago
4
miniasm output with 0 with test data

#52 ljw90607 opened 6 years ago
0
Do you keep on tagging releases

#51 tillea closed 6 years ago
2
No output of Minisam?

#50 HuJane opened 6 years ago
8
Working with corrected Nanopore reads?

#49 moold closed 6 years ago
1
miniasm segmentation fault

#48 imneuro opened 6 years ago
8
empty .gfa

#47 Raistrawby opened 6 years ago
1
How to estimate computational resource?

#46 imneuro opened 6 years ago
0