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1. Make blast db for Hydra
2. Make blast db for Nematostella
3. Bowtie2 index
4. Blastn hydra genome to nematostella genome
5. Blasn Nematostella genes to Hydra genome
6. splign
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Hi everyone.
Rust-bio have actually 28 dependencies, these dependencies have dependencies. All this stuff increase the compilation time.
In my usage and I think in the usage of many rust-bio use…
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There are substantial spliced alignment.
Should we prevent spliced alignment in non-genomic alignment?
Does hisat2-3n has that type of options?
hwlim updated
4 months ago
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The [ISOBMFF registry](https://w3c.github.io/media-source/isobmff-byte-stream-format.html) has forever included this paragraph under "Initialization Segments"
> The user agent **MUST** support code…
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Hello,
I have an error `Segmentation fault` when I run arriba v2.4.0. I tried to debug with gdb.
Below, you can find all the logs.
```
(gdb) run -x /data/sample.bam -o /data/sample_arriba_st…
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Minimap2 allows you to use -ax splice mode for spliced alignment and a way to add junction bed notations. As far as I can tell this isn't included in the current dorado release. Are there plans to ena…
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@nebulous - I took a look at the initial commit for infinitesp and will be hoping to see some code (whenever your obligations allow). I think we have common goals up to a point- specifically, I wou…
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I tried running Docker image available at Docker Hub under tag: v0.2.
I have not been able to run the latest version because I do not have a machine with arm64/v8.
I have tried 2 options:
```
s…
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Hello,
Thank you for developing such a good tool. I'm trying to use pSONIC for inferring more one-to-one orthologs between Arabidopsis_thaliana and Gossypium_hirsutum. But I encountered many errors…
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Can you please install the latest version of STAR as a module on CCR - the latest version I see on easybuild is 2.7.9a (https://github.com/easybuilders/easybuild-easyconfigs/tree/develop/easybuild/eas…