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Initial thoughts and proposals outline below, based on info collected in the requirements doc [here](https://docs.google.com/document/d/1J4AqGDEqyK8KAzfiowgHYKJNvzHuwHSHgkN9dleLemY/edit#heading=h.b3a9…
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Hello,
I ran:
python2.7 run_metasv.py --version
run_metasv.py 0.5
module load bedtools/2.24.0
module load gcc/4.8.4
PATH=$PATH:/bcbiometasv/miniconda/bin
PYTHONPATH="${PYTHONPATH}:/bcbiometasv/mini…
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This is a really cool package. I'm curious if you have considered making superintendent a community component for Dash, or incorporating it into a similar tool.
Based on your [talk ](https://www.yo…
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From ENA:
At ENA we have also been receiving queries on how to register/declare replicate samples of the types or
Technical replicates: same sample across multiple conditions, e.g. same physical…
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Hello,
I noticed that output of Strelka for detecting variants is different when using clipped bams(using ClipOverlap) with using unmodified bams. This is an important issue because I don't know how …
ghost updated
8 years ago
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## Keyword: detection
### Video Anomaly Detection by Estimating Likelihood of Representations
- **Authors:** Yuqi Ouyang, Victor Sanchez
- **Subjects:** Computer Vision and Pattern Recognition (cs.C…
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### Description of the bug
Hi,
I'm writing to ask about the PON panel when executing Mutect2 in tumor-only mode. If I’m using the GATK.GRCh38 genome, do I need to create a PON, or will the pipeline …
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### PURPLE unmatched copy number
HI brilliant tool thank you. Apologies if this is a bit of a basic question, I am new to this area. I have run purple umatched and am happy with the COBALT and AMB…
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We would like to propose a continuation of the issue [448](https://github.com/AlexsLemonade/OpenPBTA-analysis/issues/448).
#### What are the scientific goals of the analysis?
Batch effects are c…
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My understanding of qualifiers is that they are additional optional properties that add further filters in addition to matching the subject of the statement (i.e., the variant). However, there are two…