GenomicsStandardsConsortium mixs issues

GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification

https://w3id.org/mixs

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issues

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eDNA development - gather issues here for updates to MIxS and related ontologies/vocabularies

#809 lschriml opened 2 hours ago
6
Linting of LinkML YAML schema files

#808 sujaypatil96 opened 3 days ago
1
Create list of documents supporting or clarifying MIxS

#807 turbomam opened 5 days ago
0
`idna` update by dependabot failing on bioregistry import

#806 turbomam opened 5 days ago
0
add deprecation protocol for GSC

#805 mslarae13 opened 1 week ago
3
Add GSC Deprecation method

#804 mslarae13 opened 1 week ago
0
Bump urllib3 from 2.2.1 to 2.2.2

#803 dependabot[bot] closed 5 days ago
0
update HACCP_term regex to required FOODON, add multivalue example

#802 mslarae13 opened 2 weeks ago
1
Updates to terms 16S recovered [MIXS:0000065] and 16S recovery software [MIXS:0000066]

#801 only1chunts opened 2 weeks ago
1
Rock-MIxS environmental package

#800 lschriml opened 1 month ago
1
Quality classifications question

#799 ranitori opened 1 month ago
0
Bump requests from 2.31.0 to 2.32.0

#798 dependabot[bot] closed 5 days ago
0
Separate attribution from descriptions in extension documentation

#797 cmungall opened 1 month ago
1
NCBI to MIxS mapping, NMDC

#796 lschriml opened 1 month ago
0
Web documentation contains a broken link to the MIXS release

#795 aclum opened 1 month ago
0
Bump jinja2 from 3.1.3 to 3.1.4

#794 dependabot[bot] closed 5 days ago
0
Bump tqdm from 4.66.2 to 4.66.3

#793 dependabot[bot] closed 5 days ago
0
Make the landing page more user friendly

#792 cmungall opened 2 months ago
0
Bump idna from 3.6 to 3.7

#791 dependabot[bot] opened 2 months ago
0
Fix wide line in schema description

#790 sujaypatil96 opened 2 months ago
3
606 mixs editing workflow and policy

#789 cmungall opened 2 months ago
0
Add schema description to `src/mixs/schema/mixs.yaml`

#788 sujaypatil96 closed 2 months ago
2
Bump pillow from 10.2.0 to 10.3.0

#787 dependabot[bot] closed 2 months ago
0
Update mixs-templates/README.md

#786 turbomam opened 3 months ago
0
Rename folders in `mixs-templates/`

#785 sujaypatil96 closed 2 months ago
0
Reformat term list table to `Title (Name)`

#784 sujaypatil96 closed 2 months ago
2
Replace `>` with `>-` in Extensions descriptions

#783 sujaypatil96 closed 3 months ago
0
document the files in the `assets/` directory

#782 turbomam opened 3 months ago
1
stay on top of the w3id PR about the gensc namespace redirection

#781 turbomam closed 1 week ago
1
Bump black from 23.12.1 to 24.3.0

#780 dependabot[bot] closed 3 months ago
0
Discuss renaming of Food extensions

#779 only1chunts closed 2 months ago
3
Add Applicable checklists and extensions section into MIxS docs

#778 sujaypatil96 closed 3 months ago
3
Add a broken link detector action

#777 turbomam opened 3 months ago
0
replace \u2019 RIGHT SINGLE QUOTATION MARK with \u0027. APOSTROPHE (') in descriptions etc

#776 turbomam opened 3 months ago
0
add an assets/ directory or come up with another strategy for sharing derived artifacts

#775 turbomam opened 3 months ago
0
Add applicable classes (checklists/extensions) back into docs

#774 sujaypatil96 closed 3 months ago
1
How do different INSDC repos use different linkml slots to key MIxS terms?

#773 Woolly-at-EBI closed 2 months ago
3
agree a controlled vocabulary for the section field

#772 only1chunts opened 4 months ago
2
agree the definition of the section field

#771 only1chunts opened 4 months ago
1
MIMARKS checklist names incorrect in LinkML

#770 only1chunts opened 4 months ago
1
add descriptions and other annotations to extensions

#769 turbomam closed 3 months ago
2
extension dendrogram with code

#767 turbomam closed 3 months ago
2
create dendrogram of MIxS extensions, or some other all-vs-all distance metrics

#766 turbomam closed 3 months ago
1
Can the documentation pages be available via ID number and name URLs?

#765 only1chunts opened 4 months ago
0
Add MIxS 6.0 Core and Packages excel docs to MIxS repo

#764 lschriml opened 4 months ago
0
Should we still limit structured comment names to 20 characters?

#763 ramonawalls closed 4 months ago
2
Renaming folders in `mixs-templates/`

#762 sujaypatil96 closed 3 months ago
1
for visualizations, `slot_usages` over object properties should indicate narrowest range

#761 turbomam closed 5 months ago
1
look through NCBI Biosample for usages of the nose, throat, teeth type terms

#760 turbomam closed 3 months ago
6
write python test for terms that have non-UTF-8 characters in their attributes

#759 turbomam opened 5 months ago
7