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**Notebook title**: GLM hierarchical binomial model
**Notebook url**: https://github.com/pymc-devs/pymc-examples/blob/main/examples/generalized_linear_models/GLM-hierarchical-binominal-model.ipynb
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Is there a principled reason for discrete variables, such as those generated by poisson and aggregated binomials, not to be included in BGGM?
This might be a dumb question :-) But I've been implement…
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I have just noticed that the binomial lookup correction isn't making it into the output Newick files.
There are lots of pairs of taxa, where one is obviously a mispelling variant in my MRP matrix fil…
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I use the R package selectiveInference.
The manual of selectiveInference available via CRAN, doesn't give an option for families (like "binomial").
However, I tried to use family="binomial" and it …
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Tried RSU's speciesexample.sh from the Wellcome Trust workshop:
https://github.com/ContentMine/wellcome-2015-files/blob/master/02_ami/speciesexample.sh
I noticed it had a _--lookup wikipedia_ flag so…
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1. use a backreference to keep track of nodes instead of swapping childrens
- faster because we only need to swap values and backreferences
- additional memory used
2. implementation only suppor…
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I am using Python 3.11.9 and SymPy 1.12.1.
Running the following code
```python3
from sympy import *
import inspect
n, m = symbols("n m")
f = lambdify([n, m], n / binomial(m, n), modules=["n…
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Line 191 looks like this:
`Ns_n = normal_panel.loc[(row.chrom, row.pos, row.alt), 'dpP'].values`
I assume you are looking at total depth on the negative strand. Shouldn't the `'dpP'` then be `'dpN…
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#### Summary:
I would like to add some custom binomial link functions for rstanarm; I'm seeking guidance to do that.
#### Description:
In psychophysics and neuroscience, it is common to use forced-c…
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Hello! Is it possible to specify the link function as well as the family when using hier.part()? (e.g. probit link with a binomial glm)