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doing a normal local toil with the `--stats` flag, but while trying to query the job_store while the run is still going i get:
```
$ toil stats runs/run_2018-04-23-16-45-17/job_store
tshikovski 2018-0…
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Hi Benedict,
When I first ran "make test" I got many error massages like that:
```
.Running the command: sonLib_cigarTest /tmp/tmpKviSbo False
/bin/sh: sonLib_cigarTest: command not found
E......Run…
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There is nothing in bioio.getTempDirectory that can't be achieved with tempfile.mkdtemp. If a root dir is passed in, we can just use tempfile.mkdtemp( ..., dir=... ).
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Hi,
I tried to use marginAlign, but I got this error message (see below).
However marginAlign generated a sam file (BC01_margin.sam). I then generated a sam file using minimap2. I then covered the t…
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I have 2 jobstore buckets that remain persistent after using toil clean, more recent buckets (created in the past week) were cleaned out fine as normal. The message suggests they may have already been…
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Hi all -- this extracts the caching discussion from #918 (cc'ing @arkal) and provides more details so that PR can focus on Slurm.
Running cwltoil with Slurm using:
```
cwltoil --batchSystem slurm --…
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hi! i'm trying to schedule a CWL job on our mesos cluster. I've got everything up and running, but when I submit the job initially it looks like things are going lift off, but then toil seems to hang:…
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```
eduroam-169-233-244-140.ucsc.edu 2016-11-30 12:07:46,976 MainThread INFO toil.lib.bioio: Root logger is at level 'DEBUG', 'toil' logger at level 'DEBUG'.
eduroam-169-233-244-140.ucsc.edu 2016-11…
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I've been running jobs with Azure job stores, and I've been wanting to restart them from scratch. I'm supposed to be able to do this with `toil clean`, but it doesn't work.
```
anovak@amn2master1:~/h…
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Hi!
I just tried to install pAC. I followed the instructions and cloned the project into /Library/Python/2.7/site-packages/pinchesAndCacti/. I had found sonLib (installed using pip) in /Library/Pyt…