benedictpaten marginAlign issues

benedictpaten / marginAlign

UCSC Nanopore

MIT License

42 stars 13 forks source link

issues

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Update README.md

#50 opplatek closed 4 years ago
1
ImportError: No module named pysam

#49 ghost opened 5 years ago
5
marginsStats

#48 mmiladi opened 5 years ago
3
marginCall issues: AttributeError: 'NoneType' object has no attribute 'operationList'

#47 ngleadall opened 5 years ago
0
PySam error with MarginAlign+Minimap2 (last realease)

#46 tetedange13 opened 5 years ago
2
Please tag releases in git

#45 alanorth opened 5 years ago
0
RuntimeError - "expected three arguments"

#44 nadakubikova closed 5 years ago
5
raise RuntimeError("Got failed jobs") RuntimeError: Got failed jobs`

#43 herrroaa closed 5 years ago
2
Job: ~/marginAlign/jobTree/jobs/t0/t1/t3/t3/t2/job is completely failed

#42 herrroaa closed 5 years ago
8
installation error

#41 herrroaa closed 5 years ago
3
RuntimeError: Got failed jobs

#40 flokraft85 closed 5 years ago
5
No space left on device

#39 mbhall88 closed 6 years ago
2
Error: sees to be looking for enriron.pickle at the wrong location

#38 cliu32 closed 6 years ago
3
marginCaller: very long Cigar causes "Argument list too long" error

#37 MiWitt closed 6 years ago
2
make test fail

#36 LotusWang0723 closed 6 years ago
2
marginAlign error, jobTree

#35 ccp3 closed 6 years ago
3
marginAlign: command not found

#34 cliu32 closed 6 years ago
4
input fasta files

#33 ngotoor2 opened 6 years ago
4
marginAlign & marginCaller errors

#32 amnaniamin closed 6 years ago
4
make error

#31 eyasi closed 6 years ago
1
Make test fails

#30 Ubsam closed 7 years ago
4
--maxThreads?

#29 conchoecia opened 7 years ago
1
"make test" failed with 6 Errors all for testMarginAlign*

#28 danarte closed 7 years ago
6
Compilation error

#27 bsipos closed 7 years ago
3
marginStats

#26 JohnUrban opened 7 years ago
2
MarginStats "string index out of range"

#25 noncodo closed 7 years ago
1
VCF format

#24 icymiktreize opened 7 years ago
1
MarginStats gets index out of range for alignedSegment

#23 Jeltje closed 8 years ago
2
Reference fasta file

#22 icymiktreize closed 8 years ago
1
marginCaller - no such file 'posteriorProbs.txt'

#21 demharters closed 8 years ago
3
fix for shell interpreted chars in echo

#20 vadimzalunin closed 8 years ago
0
no mapping quality in final Sam file

#19 lfaino closed 8 years ago
1
Error When Running Burn-In Data

#18 twaddlac closed 8 years ago
4
Add support for BAQ like score

#17 benedictpaten opened 9 years ago
0
marginStats is slow

#16 benedictpaten closed 7 years ago
14
Documentation is out of date

#15 benedictpaten opened 9 years ago
1
Add support for assembly hubs

#14 benedictpaten closed 9 years ago
1
bwa and last are not run in parallel for marginAlign

#13 benedictpaten opened 9 years ago
0
Plots is broken on localCoordinates

#12 benedictpaten closed 9 years ago
1
MarginCall tests are inadequate

#11 benedictpaten closed 9 years ago
2
Making test data bigger

#10 benedictpaten closed 9 years ago
1
Adding identity print output to test

#9 benedictpaten closed 9 years ago
2
tests/input1Ref.sam is missing

#8 vadimzalunin closed 9 years ago
1
Assembly hub (changing realignment from global to local)

#7 mitenjain closed 9 years ago
4
Segmentation fault error when there are two references

#6 mitenjain closed 9 years ago
7
Segmentation fault in marginAlign

#5 mitenjain closed 9 years ago
0
Runtime assessments/using EC2 to benchmark

#4 benedictpaten opened 9 years ago
2
need to add VCF output to marginCaller

#3 benedictpaten closed 9 years ago
1
Needs to use virtualenv

#2 benedictpaten closed 9 years ago
2
Tests don't work

#1 benedictpaten closed 9 years ago
3