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Hi,
I am running RunVelocity function from SeuratWrappers package on some sc data from 10X:
Prol
Execution halted
Does this means that the data is not good enough for estimating RNA velocity ?…
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Hello and thank you for your work!
I am trying to use ripser to compute the persistence diagrams of 3D images. Looking at the Python code in ripser/ripser.py and especially at the `ripser.lower_sta…
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When running `hdbscan` with `prims_kdtree`, I get the following traceback. Please note my matrix is sparse.
```
Traceback (most recent call last):
File "Clustering - West Coast - Teachers.py", li…
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What are the "X field in ZCTA file" and "Y field in ZCTA file" used for? Are they used to calculate the geodesic distance?
and what should I input for the "OD pair field name in the table"?
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Hi there!
I'm wondering if it's possible to have a version of the `leverage` function that operates on sparse matrices?
I'm trying to compute leave-out standard errors (https://github.com/rsagg…
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I am trying to use HNSW for the search and have the following problem.
After building the graph, I got the folloiwng error:
`ArgumentError: invalid index: -0.017805025f0 of type Float32`
I got thi…
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Sometimes, the optimal route is calculated, but shown incorrectly. Instead of following a perfect circle amongst 4 locations, it makes an X (resulting in a lot of unnecessary kilometers).
## How to re…
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Hello,
I'm using mantel to correlate two different distance matrices.
From time to time I'm getting a negative (and not negligible) correlation. In this cases the p-value is close to 1 since most of…
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can't fit a sparse matrix as training set using object.fit()
and since the sparse matrix is [16000*3231961]. directly converting it to numpy array like is not practical.
Process to reproduce the i…
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As of now, the `HclustParam` class, has 2 slots (`metric` and `dist.fun`) that are distance related. These slots are used in
* The `show` method.
* The `clusterRows` method, where the slots are used…