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I don't think we should have these compound modification terms:
increased histone H4-K5, H4-K8, H4-K12 and H4-K16 acetylation at centromere outer repeat during vegetative growth
a) it isn't su…
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I am running the pipeline in parallel and I am getting a failure on `encode_task_xcor.py` with the error below. What might be the problem?
```
Traceback (most recent call last):
File "/home/ckibe…
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Hey Daniel, I think that it would be better to use same options that the original paper used.
From the supplementary information:
"The identification of ChIP-seq enriched regions (peaks) in ea…
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@Chris7
I am running into difficulties using pyQuant and would be grateful for any advice.
The samples are neucode (duplex).
RAWs have been processed with MaxQuant (1.6.5) which incorporates a n…
rpm78 updated
4 years ago
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I am following your notebook on context free QA (thanks for setting that up). I am substituting your "natural_question" data set with BioASQ-training7b. I am only using "exact_answers" from BioASQ,…
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it is involved in
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation
please delete
http://www.uniprot.org/uniprot/O14023
histone acetyltransferase activity
and
regulation of transc…
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for e.g. hta1 and hta2 allele descriptions state e.g. S121A mutations, but the serine is actually at position 122 in the sequence (could be either becuase it is 121 in human, or a residue is trimmed?)…
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It will be convenient to add ChromHMM BigBed tracks, but search cannot find anything for https://www.encodeproject.org/annotations/ENCSR511WOF/ track
Genome: `hg19`
![image](https://user-images.gi…
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Hi,
I would like to look at differential histone modifications between two different conditions. I have tried the Diffpeak option for this but can not find much information as to how it calculates d…
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Hi,
I notice that all the peak Start positions end in "00" (including in your own examples). How is that possible?
Here's my command using epic2 v.0.0.41 under Ubuntu 18.04:
epic2 --treatment i…