biocore-ntnu epic2 issues

biocore-ntnu / epic2

Ultraperformant reimplementation of SICER

https://doi.org/10.1093/bioinformatics/btz232

MIT License

55 stars 9 forks source link

issues

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Build failure with Htslib 1.20

#77 martin-g closed 5 months ago
3
Keeping low number of duplicates

#76 phoebe460 opened 5 months ago
3
EPIC2 can't use

#75 anyang-kevin opened 7 months ago
5
Int overflow when parsing ChIP files.

#74 vidal-adrien closed 11 months ago
3
Custom genome use isn't clear

#73 c-guzman opened 11 months ago
3
epic2-df ValueError

#72 PeterHHer opened 1 year ago
0
epic2 installed but not working

#71 ltosti opened 1 year ago
0
Problem running epic2-df

#70 Holmes815 opened 1 year ago
1
epic2 does not work for custom genome

#69 Turckie opened 1 year ago
2
epic2-bw KeyError: 'required_flag' , doesn't appear in arg parser

#68 a-lahat opened 1 year ago
2
Error handling -1 positions in BEDPE files

#67 bu-bgregor opened 1 year ago
1
Install error

#66 hiroyukikato911 opened 1 year ago
0
Can epic2-df support biological replicates?

#65 hdshu opened 2 years ago
1
epic2 vs sicer2 1.0.3

#64 darked89 opened 2 years ago
0
Blacklist region handling

#63 sitr1014 opened 2 years ago
1
Epic2 running error caused by chromosome names in my alignment file

#62 sitr1014 opened 2 years ago
1
epic2 with bedpe input issue

#61 yussufhajjaj opened 2 years ago
15
built-in genome list

#60 nermah1 opened 2 years ago
1
how to use custom genome i.e. E. Coli in epic2 ?

#59 Ankana001 opened 2 years ago
1
Very different results of epic2 vs macs2

#58 kikegoni closed 2 years ago
1
Error running epic2 v0.0.52

#57 benayang opened 2 years ago
6
is v0.0.52 available on bioconda?

#56 tingliu-uhn closed 2 years ago
3
Are output coordinates one or zero-based?

#55 rauldiul opened 2 years ago
3
ValueError: need more than 0 values to unpack

#54 chenchen-eng opened 3 years ago
1
epic2 Failed to install on Mac

#53 jjp55 opened 3 years ago
7
`epic2-bw` failed with KeyError: 'guess_bampe'

#52 xie186 opened 3 years ago
4
Library not loaded - Reason Image not found error

#51 sufyazi closed 3 years ago
2
Bedpe

#50 tan5251 opened 3 years ago
1
median fragment size

#49 tan5251 opened 3 years ago
2
gap size

#48 tan5251 opened 3 years ago
2
effective genome size

#47 tan5251 opened 3 years ago
2
`guess_bampe` missing for `epic2-df`

#46 mzytnicki closed 3 years ago
7
SyntaxError in epic2-0.0.47

#45 dconnolly1 opened 3 years ago
3
Epic2 with no input

#44 nservant opened 3 years ago
8
epic2 running for ages without throwing any error

#43 Bio-finder opened 3 years ago
2
error when running epic2-df example

#42 smartgamer opened 3 years ago
19
bam paired-end support not yet available for epic2 in current conda installation

#41 daveiles closed 3 years ago
3
Missing --guess-bampe argument

#40 KunFang93 closed 4 years ago
7
epic2 installed but not working

#39 pb016 opened 4 years ago
2
Bampe format support

#38 alnfedorov closed 4 years ago
10
epic2 ran as normal but didn't return outputs

#37 dcheng1 closed 4 years ago
6
OverflowError reads_to_bins

#36 friederhadlich closed 4 years ago
24
missing large domains

#35 runningvato opened 4 years ago
8
Unexpected behavior keep-duplicates 0.0.41

#34 mpaya closed 4 years ago
5
Start positions all end in 00

#33 melemieux closed 4 years ago
2
"Exception: Not valid subsetter: 1" while using epic2-df

#32 wesleylcai closed 5 years ago
16
epic2 run error - Expected 72 from C header, got 88 from PyObject

#31 mbassalbioinformatics closed 5 years ago
4
"failed building wheel for epic2" error during pip install

#30 sufyazi closed 5 years ago
11
bedpe input not processed correctly

#29 ptrebert closed 5 years ago
17
how to discard more than one chromosomes with parameter -d

#28 ShuangHe33 closed 5 years ago
4