-
We should baptize this package with a proper name. Some suggestions:
1. keep it the same: **delimit** (I'm against it)
2. change it to: **mptp** an acronym for multi-rate ptp.
3. change it to **MrPTP*…
-
Output the delimitation yielding the maximum likelihood in the SVG file, and place on it the support values.
-
-
After discussion with Kassian and Paschalia we have concluded on the following possible way of auto-detecting the value that should be used as minimum branch length threshold by the user.
The method …
-
Subtrees consisting only of very short branch lengths (shorter than the specified `--min_br`) should never be proposed as coalescent roots in the bayesian proposals. It should be incorporated in both …
-
Export the node support values generated from Bayesian runs into a tree into the [extended newick](http://dmi.uib.es/~gcardona/BioInfo/enewick.html) format:
`[label]#[type]tag[:branch_length]`
-
As currently implemented, the SH-like test requires the tree being tested to be NNI optimal, and will actually find a better tree if possible. However, this does not allow for targeted hypothesis test…
-
I have an example with a very small alignment (see below) where I want the likelihood for three alternative topologies (see below). All of this is using the most recent pull from github (Standard RAxM…
-
We established two new evaluation features:
```
./eval/calculate_distances.py hist-model eval/res/results/*/*.result
./eval/calculate_distances.py hist-model-per-ic eval/res/results/*/*.result
```
T…
mhoff updated
9 years ago
-
Would love to see support for the university library in Trier.
See: http://tricat.uni-trier.de/
I'm more than happy to help you, if I can :)