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Hello, I tried `depeche` with a piece of mass cytometry data, but it didn't goes well.
The output:
```R
As the dataset has less than 100 columns, peak centering is
applied.
S…
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@bkarger : We have been noticing that some of the bolded words in the print version do not show up online, but we do want the students to include all bolded terms from the print version. To help you o…
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Hi there,
Thanks very much for all your vignettes - they've been really useful.
I was wondering if you had any advice on anything to try for a problem with signal from 2 of my CITE-seq antibodi…
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I'm using CATALYST V1.12.2 to analyze flow cytometry data. Am able to create the singlecellexperiment object, run MDS, expression heat maps, and plot expression, but cluster is failing. The error I ge…
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Hi Helena,
I installed CATALYST and wanted to try it out but I get an error while trying to load the package.
```
Error: package or namespace load failed for ‘CATALYST’:
object ‘compute_tim…
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Hello,
I am looking for open source, automation-friendly software to do end-to-end processing for imaging mass cytometry data, and I was wondering if Cytokit would fit the bill? I have data similar…
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Thank you for your wonderful packages.
I use flow cytometry in the non-classical way, to analyse ratiometric experimental quantities, rather than count the proportion of of different populations wi…
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Hi,
I have seemingly managed to install scamp. However, after running the suggested lines
tryCatch(installed.packages()["knitr","Version"],
error = function(e){
install.pack…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kevinblighe/scDataviz
Confirm the following by ed…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/saeyslab/PeacoQC
Confirm the following by editing…