RGLab openCyto issues - Githubissues

RGLab / openCyto

A package that provides data analysis pipeline for flow cytometry.

GNU Affero General Public License v3.0

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issues

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Quad gates not working

#254 sbg30 opened 1 month ago
1
Evaluate minEvents gating argument for CytoExploreR.

#253 djhammill closed 3 months ago
2
openCyto not exporting gate_singlet()?

#252 mikejiang closed 5 months ago
1
Handle multiple alias in GatingSet check.

#251 djhammill opened 11 months ago
0
Quarto does not parse openCyto citation correctly

#250 rwbaer opened 11 months ago
0
tailgate function not found

#249 may-sath closed 5 months ago
2
Rename flowWorkspace calls

#248 RSM151 closed 1 year ago
1
Example in register_plugins docs

#247 steveb-123 opened 1 year ago
1
gate_mindensity_2( ) unable to find valleys even if gate_range() or min/max specified

#246 maximesunnen opened 1 year ago
0
Add support for pop = "*" for quadrant gating methods

#245 djhammill closed 1 year ago
0
Graphics is the vignette are uggly.

#244 SamGG closed 1 year ago
2
Legend

#243 lulunaheed closed 1 year ago
1
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto

#242 noeldtz opened 1 year ago
1
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template

#241 noeldtz opened 1 year ago
1
fix start/stop.at argument in gt_gating function

#240 mikejiang closed 2 years ago
0
Problem with start/stop.at argument in gt_gating function

#239 htanaka1234 closed 2 years ago
4
Inverted reference gate in gt_gating function

#238 htanaka1234 closed 2 years ago
4
Get error message while using openCyto:::.flowClust.2d

#237 hsiuhong1 opened 2 years ago
6
Improvements to openCyto Clustering Framework

#236 DillonHammill closed 1 year ago
2
Support empty dims

#235 mikejiang closed 2 years ago
11
Add support for empty dims in gatingTemplate

#234 DillonHammill closed 2 years ago
7
thisCall statement never used in .gating_adaptor()

#233 kforner opened 2 years ago
0
Update pluginFramework.R

#232 gfinak closed 1 year ago
0
update build workflows

#231 gfinak opened 2 years ago
0
duplicated preprocessing plugin prior_flowClust

#230 kforner opened 2 years ago
0
Minor improvements to openCyto

#229 DillonHammill closed 2 years ago
2
Error in fread(gtFile) : Input is empty or only contains BOM or terminal control characters

#228 tsierocinski closed 3 years ago
2
Create LICENSE

#227 gfinak closed 3 years ago
0
Unable to plots gates

#226 drpreeti3628 closed 3 years ago
1
How to add correct gate_range

#225 drpreeti3628 closed 3 years ago
4
Error in openCyto:::.read.FCS.csv()

#224 prubbens closed 3 years ago
4
Gating using a specific quadrant

#223 drpreeti3628 closed 3 years ago
3
gt_gating function not found

#222 drpreeti3628 closed 3 years ago
2
new gate_tail and 'side==left' behavior

#221 alexheubeck closed 3 years ago
3
Better documentation for preprocessing methods

#220 wjs20 closed 3 years ago
1
gt_gating cannot detect channels of interest

#219 wjs20 closed 3 years ago
5
mindensity selecting only positive

#218 fbenedett closed 3 years ago
4
tmix2DGate not found

#217 santoshe1 closed 4 years ago
1
tail_gate function side argument alters the start, but not end, position of the gate

#216 Tariq-K closed 3 years ago
15
flowDensity wrapper error

#215 alexheubeck closed 4 years ago
5
Function or documentation to create derived parameter

#214 steveb-123 closed 3 years ago
30
Can we use Opencyto to gate cytotoxic T cell subsets using 3 markers?

#213 Sithara85 closed 4 years ago
11
Use the C++ library outside R?

#212 Mosaic-DigammaDB closed 3 years ago
3
MFI values from gates

#211 browshanravan closed 4 years ago
17
gating on multiple populations with flowClust.2d

#210 browshanravan closed 3 years ago
6
Potential errors in "An Introduction to the openCyto package" vignette

#209 stefankolling closed 4 years ago
5
Selecting specific cell populations

#208 IvanaOsredek closed 3 years ago
3
pivot option to gate_mindensity and gate_mindensity2 is not honored

#207 jacobpwagner closed 3 years ago
4
boolGates not appearing as nodes in plot(gs) gating tree

#206 alexheubeck closed 4 years ago
2
How to extract the cell label information

#205 liupeng2117 closed 3 years ago
2