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I performed alignment using the same small RNASeq data and reference genome using miRDeep2 and bowtie1, respectively.
It is known that miRDeep2 uses bowtie1 for mapping, but the results using miRDeep…
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### Description of the bug
The bug occurs due to unrecognized arguments passed to the `seqcluster` command. It expects input files in a specific format but receives unexpected arguments, causing te…
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for each species,
denoting which are database matches and which are denovo.
Preferably in repo if size allows.
sr320 updated
5 months ago
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Hi all again,
cc: @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
After giving some time to think, I realized we could ask slightly different for a solution the n…
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@lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC @sbb25 @phillipeloher
Hi all,
It will be a little long email, but please take 15 min to go over…
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Hi Reza,
I recently ran miRador on _Striga hermonthica_ and rice data. The results output over 200 candidate miRNAs. When I do alignments however, I see only half of the miRNA sequences can be foun…
Aez35 updated
6 months ago
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stats are here: https://docs.google.com/spreadsheets/d/1kTSYUTrgDXpXlXJpekG3ifRCbjjIqinnI3vH3DgU_BU/edit?gid=0#gid=0
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Hello,
I'm trying to follow your MAmBA test code using the following command after downloading the files from https://sites.google.com/a/uniroma1.it/valeriofulci-eng/software :
_/mamba.sh -a TGG…
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This is not a question about your scripts but about the original miRDP2 pipeline, but maybe you can help. It is also maybe a stupid question based on my own inability to follow the pipeline scripts.
…
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Hello, Dr Axtell.
I have two batches of data, both of which are of the same species, and I ran two separate analyses to get two results files. But I found that their clusters are actually complete…