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rajewsky-lab
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mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
GNU General Public License v3.0
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UMI data
#128
denise0593
closed
2 weeks ago
3
Discripancy in mirdeep2.pl and quantifier.pl outputs.
#127
oneito
opened
1 month ago
2
negative repeat count does nothing at quantifier.pl line 1312, line 5603.
#126
erickfabian0
closed
3 months ago
1
installation problem
#125
yefanglee
closed
3 months ago
7
How to generate count matirx when the type of mature miRNA is the same but the precursor miRNA is different
#124
g0656116
closed
5 months ago
1
Difference in mapping rate when aligned with mapper.pl of miReep2 and bowtie1
#123
g0656116
closed
5 months ago
4
miRDeep2.pl running slow
#122
dhananyashunmugam
closed
5 months ago
1
The mapped reference id NC_000067.7 from file mice_miRNA_reads_vs_GRCm39_Trim4.arf is not an id of the genome file /home/genome/GCA_GRCm39.fa
#121
genesio-Ka
closed
2 months ago
2
quantification of expression on novel miRNA detected
#120
moxgreen
closed
6 months ago
2
Reference Files for miRDeep2.pl
#119
s-weissbach
closed
9 months ago
1
mirdeep2 is not generating arf files
#118
genesio-Ka
closed
6 months ago
16
minimum score cut-off (-b) with -10 gives fewer results than with -5
#117
jontejj
closed
1 year ago
1
sRNA spike-ins
#116
mschilli87
opened
1 year ago
9
No output when running quantifier with MirGeneDB seqs
#115
iammrtza
closed
1 year ago
6
Query related to output of mirdeep2.pl script of mirdeep2
#114
99ARITRA
closed
1 year ago
3
[FR] support using Perl versions installed elsewhere but `/usr/bin/perl`
#113
albenstein
closed
1 year ago
15
unable to extract files from mirbase using extract_miRNAs.pl ~/mirbase/21/mature.fa.gz hsa > mature_ref.fa
#112
varshinivempadapu
closed
1 year ago
1
One precursor have two locations of mature miRNA sequence
#111
Yuzhang0102
closed
1 year ago
3
mapper.pl takes a long time for some data
#110
Chenmi0820
closed
1 year ago
2
Mapping file name.arf is not in arf format
#109
Chenmi0820
closed
1 year ago
7
New release?
#108
hmontenegro
closed
1 year ago
3
Whitespaces not allowed
#107
DylanDSouzaInd
closed
2 years ago
1
install.pl failed
#106
yy549159265
closed
2 years ago
0
What is the end flag of mapper.pl
#105
yy549159265
closed
1 year ago
2
arf is empty
#104
yy549159265
closed
2 years ago
2
Fail to install
#103
ShenTTT
closed
2 years ago
1
Use of uninitialised value message repeated in output many times
#102
elayton13
closed
1 year ago
4
Minimun read length in miRDeep2 main script
#101
JoseCorCab
closed
2 years ago
2
mapper.pl doesn't find bowtie index when given index name is wrong
#100
lizhan96
closed
2 years ago
3
Consultation on the analysis pipeline for species that do not have mature and precursor miRNA sequences in the miRBase database
#99
wbc569668815
closed
2 years ago
4
excise_precursors_iterative_final.pl error
#98
Sreeranjini611
closed
1 year ago
2
consensus.star.sequence
#97
keenhl
closed
2 years ago
1
bwa_sam_converter.pl split loop error
#96
smahaffey
closed
1 year ago
10
Error sort: cannot create temporary file in '/tmp/': Read-only file system
#95
RRebo
closed
2 years ago
3
Incorrect script reference in README
#94
mschilli87
closed
2 years ago
3
Install mirdeep2 for all users
#93
cweiming
closed
2 years ago
2
Build.pl
#92
mmterpstra
closed
2 years ago
2
miRDeep2 throws errors due to having faulty input files or a faulty installation
#91
mickey-spongebob
closed
3 years ago
7
Mirbase URLs changed, links in output don't work
#90
Shellfishgene
closed
3 years ago
1
miRDeep2.pl error when loading reference genome
#89
ISonets
closed
3 years ago
5
install.pl: Fix Perl PDF::API2 installation
#88
mschilli87
closed
3 years ago
0
Can't locate PDF/API2.pm in @INC
#87
SimoneFromThePlantLab
closed
3 years ago
17
No whitespace in my .fa, yet I get a whitespace error in miRDeep2.pl
#86
timdelory
closed
3 years ago
4
quantifier.pl not generating pdf files
#85
hzuzu
closed
3 years ago
1
.arf file is empty and miRDeep2.pl is throwing error as reads_collapsed_vs_genomeIIYL1.arf is not in arf format
#84
harshraj1919
closed
3 years ago
3
parameter
#83
WeiXu63
closed
3 years ago
5
parameter
#82
WeiXu63
closed
3 years ago
3
mirdeep2 aborts when having non-canonical chromosome identifiers in genome file
#81
biogerman
closed
3 years ago
2
Forgotten command line argument leads to an error message from miRDeep2.pl
#80
annefleurbrand
closed
3 years ago
2
miRDeep2_core_algorithm.pl error
#79
banedeus
closed
3 years ago
13
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