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I am working on converting data with segmentations to ngff using the "image-label"s.
There are a couple of questions about the description in https://ngff.openmicroscopy.org/latest/#label-md:
1. Are…
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Hi all,
I'm just wondering how complicated it might be to provide a writer for napari. I just tried to save a dataset in napari as "test.zarr" and it was written to disc as "test.zarr.tif".
If …
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At the moment all our image arrays are 4D (CZYX) and each one of our label arrays is 3D (ZYX). This property is visible in the `.zarray` files, and in the folder structure. When the dimension along Z …
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Hello,
The dependency solver seems to go on an infinite loop when trying to add `ome-zarr` to a poetry project.
Can be reproduced even with just ome-zarr as the only dependency:
```
alik@AFI…
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Thanks for this useful repo! I have a question about best practices.
We have data that can be `tczyx` ordered. We generate one `zyx` volume, held in an `ndarray`, at a time by iterating over all ch…
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ping @NicoKiaru
The aim of this proposal is to provide means of defining pairwise registrations of sources.
In case of grouping sets of sources into a common viewing scenario (multi-modal experi…
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I am noticing that the OME-Zarr specifications have an option to have a "color" properties within the channel metadata. We use this property do define the colormap for when `napari-ome-zarr` opens up…
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This PR is currently in progress, but could be merged soon (for some loose value of "soon", I don't have a good idea of when) https://github.com/ome/ome-zarr-py/pull/192
When it is done, I think it…
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## 🐛 Bug
## To Reproduce
Steps to reproduce the behavior:
1. `bioformats2raw --scale-format-string '%2$d' a.fake sample.ome.zarr`
2. `napari sample.ome.zarr`
3. exception thrown:
```…