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Hi there,
Macs2 is a great software and I used macs2 bdgdiff to call differential binding events of RNA polymerase ii following this link: https://github.com/taoliu/MACS/wiki/Call-differential-bindin…
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Hi,
PAPi was identified as being non-maintained/unresponsive and will be deprecated in the next BioC release. PAPi is described in the section 2.7.4 Pathway analysis. I am wondering if we should ke…
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Dear Developers,
I could have CellCall up and running on a seurat object. Within this object, I have about 25 different clusters. This is a bit of a limited dataset where i have another dataset th…
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- [x] Methylation tab cBioPortal/cbioportal#7683
- [ ] Should we support continuous CNA data?
- [x] Support patient level enrichments analysis cBioPortal/cbioportal#4637
- [x] treat overlapping pa…
jjgao updated
8 months ago
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Hi Jinghuazhao,
Thanks for the pipeline.
I have been trying to run MAGENTA tool for pathway analysis.
I could not find the reason for the error.
input_pipeline.sumstats: line 1: SNP: command not f…
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## Description
**Q: What is the name of the feature?**
A: Event metrics service
**Q: What does this feature enable the user to do?**
A: Provide implicit feedback
**Q: What informati…
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I've recently started using your [Appyter for Independent Enrichment Analysis](https://appyters.maayanlab.cloud/Independent_Enrichment_Analysis/) to analyze the Enrichr catalog with a costume backgrou…
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Hi,
First of all, thanks for creating this tool. It seems very neat for crunching down picrust2 output.
I am trying to run `pathway_errorbar` function but getting the following error:
```
Er…
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**Is your feature request related to a problem? What value do you see this adding? Please describe.**
For Pathway tab, we need to add download option of the enriched pathways with the normal informat…
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# Enrichment analysis
Hi, cool initiative! This will definitely be helpful for the community and for teaching in the university.
I'm Pau, a PhD student from [saezlab](https://github.com/saezlab/…