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ShellyCoder
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cellcall
inferring cell-cell communication from scRNA-seq of ligand-receptor
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How to select specific cell sender and receiver when using ViewInterCircos function?
#48
helnSYSUCC
opened
2 weeks ago
0
Thanks for developing such a useful tool, but it takes a lot of time to run it, how to increase the speed of running it
#47
XjtuZhangKun-lab
opened
2 months ago
0
error when run getHyperPathway
#46
Stufen-TONG
opened
1 year ago
2
Questions about the LR-TF database
#45
qijt123
opened
1 year ago
3
Where to find the table with complete ligand-receptor-TF-pathway data
#44
gynecolojiji
opened
1 year ago
1
LR2TF error
#43
Felixillion
closed
1 year ago
2
Normalised data
#42
Imm123
opened
1 year ago
1
Issue with CreateObject_fromSeurat
#41
sidrahmaryam-cyber
opened
1 year ago
1
Issues running TransCommuProfile
#40
elisulvaran
opened
1 year ago
2
function error: ViewInterCircos
#39
hhx465453939
closed
1 year ago
0
Error when run getHyperPathway
#38
tqh003
opened
1 year ago
1
How to compare cell communication
#37
tu12dou
opened
1 year ago
1
A problem of figure output
#36
HMU-ChaoWang
opened
2 years ago
1
Hi, I'm having a problem with ViewInterCircos
#35
athanasy-ljw
opened
2 years ago
4
Apologize for being late!
#34
ShellyCoder
closed
1 year ago
0
A problem with TransCommuProfile() function while implementing vignettes codes
#33
chunxubioinfor
opened
2 years ago
2
show ligand/receptor names in ViewInterCircos result
#32
dnchenchen
opened
2 years ago
1
Image alignment in getGSEAplot
#31
QuinceyLv
opened
2 years ago
1
Mouse cell-cell interaction shows Human KEGG pathway in the results?
#30
jyopadi
opened
2 years ago
1
install error
#29
sunyu199711
opened
2 years ago
1
cellcall with integrated data (Seurat)
#28
akramdi
opened
2 years ago
1
problems with TransCommuProfile()
#27
qingzengLi
opened
2 years ago
3
Error in FUN(X[[i]], ...) : only defined on a data frame with all numeric variables
#26
cyqi6365
opened
2 years ago
1
Issue with TransCommuProfile step 5 softmax for ligand
#25
LaviCor
opened
2 years ago
3
A problem in scoring Ligand-receptor relation
#24
ChintanBhavsar93
opened
2 years ago
3
A problem when using "TransCommuProfile()"
#23
ADSGF203com
opened
2 years ago
1
Relationship between TFs, receptors and ligands in new_ligand_receptor_TFs.txt
#22
realzehuali
opened
2 years ago
1
cellcall can be installed, but can't be loaded
#21
BinghuaLi
opened
2 years ago
0
Problems encountered with getGSEAplot
#20
jiangh615
opened
2 years ago
1
Error encountered while installing the CellCall package
#19
jiangh615
opened
2 years ago
3
Can you use CellCall with mouse datasets?
#18
rachel662
opened
3 years ago
1
when using the tools in 100000 cells, The problem met!
#17
hzaumsq
opened
3 years ago
1
Receptor complex information missing from mouse dataset
#16
PerrineLacour
opened
3 years ago
1
could this software be used to compare two or more treatment?
#15
Baoquan-Han
opened
3 years ago
2
[bug] Error when creating object with Full-length df
#14
PerrineLacour
opened
3 years ago
3
Update data2ConnectProfile.R
#13
sbwilson91
opened
3 years ago
1
How to refine signaling input into a handful of clusters out of many.
#12
kasumaz
opened
3 years ago
1
Error in creating from Seurat object
#11
kasumaz
closed
3 years ago
0
Running package with mouse datasets
#10
kasumaz
closed
3 years ago
0
The problem when using a large scRNA data
#9
youwh1996
opened
3 years ago
8
Questions about LR2TF function
#8
anchormok
opened
3 years ago
1
Error when using Viewintercircos
#7
millersan
closed
3 years ago
9
How to deal with batch?
#6
millersan
closed
3 years ago
3
ViewInterCircos
#5
sailseem
opened
3 years ago
6
Installation problem: unable to re-encode 'myGSEAplot.R'
#4
Iza410
closed
3 years ago
2
A problem when using "CreateObject_fromSeurat()"
#3
ylxie21
opened
3 years ago
1
Seurat rds input
#2
strawberry789
opened
3 years ago
1
Tianyuan Liu -- yyds
#1
YangXinyan
closed
3 years ago
2