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Hi Andy, first of all thank you for your work.
Are you working on an updated model for Llama3? Would love to run it for a dataset I am using
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Dear professor,
We conducted an analysis using MTAG. Overall, the correlation between the effect sizes from MTAG and the original GWAS is quite good, r=0.67; however, we found that the effect sizes o…
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Running the following code with model selection = true gives the following errors and does not produce the BIC files. The same input files will produce output without model selection = true for the mu…
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Hello, I am new to this analysis, I would like to know how you can match your patient's genotype with its phenotype, can you please load up the code?
Thanks so much
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Hello GitHub Community,
I am working on a research project that involves high-throughput phenotyping of morphological orange fruits characteristics using X-Ray computed tomography (CT). I am parti…
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Consider using the individual, sample, metadata, and variant core APIs as templates for a genotype + phenotype query language.
For example, we can ask for information about alleles in a specific coho…
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Hi Carl,
I have some datasets with > 5 Million SNPs (but < 500 samples and 1 phenotype). The run with single_snp takes more then 8 hours. Is there any way to speed up things?
Thanks
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Say you hypothetically had three phenotypes - cough, headache, and congestion. These phenotypes will all highly correlate with each other among individuals. Wouldn't this correlation inflate the Baye…
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We should review the lethal phenotype patterns and add them to uPheno if we believe the way they are are the way to go!