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I have a wondering that why the depth in the file assembly.fasta in the result could be under 1X. For example, one contig of my results showed that the depth is 0.80X.
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Hi, I'm new to pbx.
Can pbx use the polished genome files as input?
Here is the reference
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.17877
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It's often useful to search for plasmids/oligos I know that I have put in instead of sorting for all the M18BP1 reagents that everyone has generated.
Right now it doesn't appear there's a way to sear…
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Dear sir,
We used the Illumina platform to determine the whole genome consensus sequence and to
identify intrahost single nucleotide variants for each patient-derived sample
we want to using DeepS…
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Hi,
I tried several times to perform BP reactions with the Recombination Assembler tool of version v3.1.6, July 10, 2024 on Windows but each time the tool puts my plasmid in the "insert" part inste…
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Because this pipeline is going to be used by multiple project that have a variety of different host organisms it is needed to create a database that contains all these hosts. In the first place to be …
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This SEP proposes a set of terminology and practices for representing genetic parts and functional devices at various stages of design, synthesis, and assembly. These practices are intended to represe…
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We have multiple people working on how to make glycerol stocks and the strain database. @LauraT89 added info on making glycerol stocks in pull request #48. I've created a branch `lab-stuff-strains` wi…
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Currently the functions do not have docstrings, and it's hard to understand how to use them.
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I've been testing the combination of PlaScope outputs with gplas (ref: https://doi.org/10.1093/bioinformatics/btaa233) to get individual plasmid reconstructions (instead of just binary classfication o…