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Hey!
I have a problem with the GenBank files created by Prokka (v. 1.11) - the contig name and its length are not separated by a white space. I assume the reason is that I increased `$MAXCONTIGIDLEN…
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**Tool Details**
- Name of tool: Roary
- Tool homepage: https://github.com/sanger-pathogens/Roary
- Tool description: Roary combines prokka output (annotated microbial genomes) from multiple org…
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Hello,
It continues to fail at the blastp step. Any thoughts?
cat \/projects\/raw_lab\/Cerberus\/data\/prokka_results_RW1\/\/RW1\.IS\.tmp\.30508\.faa | parallel --gnu --plain -j 8 --block 6121 -…
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Had this issue while running prokka
![find_error](https://user-images.githubusercontent.com/110957857/184806167-f69ecc05-2011-432e-ab71-a780d05caa7e.PNG)
any advice to debug this issue?
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I am 97% sure this is out of scope for sssom-py and this should be either it's own tool or something as part of a general gff package. But this seems like a good place to seed the idea.
GFF allows …
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Hi,
It is so weird that this error today popped out for gene annotation. The job of annotate cannot pass, here is the log information I had.
[2024-09-18T164353.446228.snakemake.log](https://gi…
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Dear Torsten,
**first of all thanks for your efforts on Prokka ! The whole community owe you one.**
I annotated my assemblies with Prokka 1.14.6 with "--compliant" option.
When uploading the …
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For plasmid you will not get a good result if you just use the default settings.
I would recommend getting GENBANK files (.gbk or .gb) of all the plasmids that are similar to your one.
Say you g…
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_This is the command I use:_
prokka --compliant --centre X --locustag M --outdir XXX --force --prefix XX --addgenes --genus Lactiplantibacillus --species plantarum --strain XXX --rfam --setupdb Bac…
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from @haruosuz:
It would be great if we could choose tRNAscan-SE as well as Aragorn in prokka.