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Documentation to setting up instances of KG on AWS: https://github.com/clinical-biomarkers/biomarker-partnership/tree/main/supplementary_files/documentation
Goal: Create knowledge graphs and cyph…
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Project Lead: @lazycipher
Mentor: @yochannah
Welcome to OLS-1! This issue will be used to track your project and progress during the program. Please use this checklist over the next few we…
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Could you please provide me with this paper? Because my school does not have permission to read this article. In addition, the human_receptors.csv file contains Topology. Is this necessary? Is it okay…
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**Is your feature request related to a problem? Please describe.**
The issue is picking a predicate for drugbank descriptions of genes/proteins that are linked to chemicals (keywords like enzyme, car…
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#### Current behavior:
60 genes are discovered to be uncorrelated with their corresponding reactions in `Purine metabolism`
| Gene | UniProtID | Reaction | GPR| Correlation | Manually chec…
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Currently cBioPortal importer in MutationFilter.java ignores lots of mutations which could be interesting to the researchers. I've tried disabling it (i.e. allowing all mutations from the input files,…
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The atomic convolutions currently take in an entire protein-ligand complex. This makes working with them very gnarly since proteins get large (tens of thousands of atoms easily). Since the coordinates…
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Hi there,
I've made a small prototype Nextflow pipeline to run Augustus in PPX mode with custom protein profiles, via Docker or Singularity:
https://github.com/photocyte/luciferase-PPX-predictor-n…
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Hey people,
I will also try to put down what I remember of Amrits conversation with us.
- Look at differential network analysis. This can be used to see the differences in networks between the…
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Dear peers,
I am facing a problem while executing the command 'md2pharm'.
The terminal was appeared as- no module name 'Philip.modules'.
How can I solve the issue??
![Screenshot from 2021-12-14 0…