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- [ ] Special topic on optimization by Dr. Heng Li @liheng0407
- [ ] Chapter 5 Panda study led by Lei Xiao @radium05
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Hi
I have been trying to use RCy3 to import nested networks from R to Cytoscape and I run into the issue that I have no way of specifying source and target columns with the function "importNetwork…
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I am currently working with MaSIF-search and am looking for a way to extract the residual numbers of a patch to validate the results. Does anyone know if this is possible?
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Hello,
I have a ply file which can be manually loaded by click the `Open Files` in molstar web service to describes the surface of a protein. However, I recently want it to be automatically loaded…
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Dear openmm developers,
Recently, we wrote a protcol to run membrane protein using openmm and CHARMM as force fiels. We generally, build and obtain topology, and psf,/pdb using a combination of htm…
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I recently had a discussion with Adam Hospital about making the OPTIMADE standard suitable for biomolecular data.
The most important data to share, that is not standard in Optimade, would be:
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Based on @KatoLeonard's [analysis](https://github.com/opensourceantibiotics/murligase/issues/51#issuecomment-933646217) of the first round [MurD activity assay results](https://github.com/opensourcean…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/lisiarend/PRONE
Confirm the following by editing …
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Hi, scanpy team!
I am trying to understand if `scanpy.pl.spatial` would support using the fullres histology image. E.i. if it supports `img_key = 'fullres` where it would pull the image from 'fullr…
vitkl updated
3 years ago
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Hi all!
For my project, I wish to describe the protein-ligand interactions between Mur Ligase and a known inhibitor, and hopefully, use this information to modify the molecule to extend its spectr…