LPDI-EPFL masif issues - Githubissues

LPDI-EPFL / masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

Apache License 2.0

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issues

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Update: Pymol Plugin

#80 wejulius opened 2 weeks ago
0
Use MaSIF-site independently of Chains

#79 TobiasPol opened 1 month ago
0
Inquiry Regarding Access to Open Source Code for "Targeting protein-ligand neosurfaces using a generalizable deep learning approach"

#78 biomolecule opened 1 month ago
0
Using atom.element instead of name[0] in output_pdb_as_xyzrn

#77 JackMaguire opened 3 months ago
0
defining mu and rho for conv layers

#76 byungukP opened 3 months ago
0
Training a new model

#75 Lsz-20 opened 4 months ago
0
embedding extraction

#74 johnnytam100 opened 6 months ago
4
β-strand extract scripts

#73 noobnewcomer opened 7 months ago
0
Out of memory during training

#72 almosti opened 7 months ago
0
How to establish a connection between amino acid residues and a patch

#71 dongspy opened 7 months ago
0
Extract the residue numbers of a patch

#70 TobiasPol opened 8 months ago
12
can't install reduce

#69 bukkeshuo opened 8 months ago
4
Enhancement: Varying pH for predicting patches

#68 TommiAnna opened 9 months ago
0
Data processing script is not working

#67 BSharmi opened 9 months ago
3
Can't install MSMS

#66 zimb3l opened 9 months ago
1
Non-Pdb bank structures

#65 luisalisboa-mcr opened 9 months ago
2
why (1 - auc_roc)

#64 raoufkeskes closed 7 months ago
4
update tf version to 1.15

#63 xiaolinpan closed 9 months ago
0
Issue with opening PLY files in the latest version of PyMOL

#62 YFeri closed 11 months ago
3
can't install reduce

#61 Turningl opened 1 year ago
3
MaSIF_search usage

#60 xiaolinpan closed 10 months ago
1
Descriptor NaN

#59 mikewzp opened 1 year ago
0
Incorporation of cofactors

#58 jadeshi opened 1 year ago
0
Problem about the 'vertex_mean_curvature' and 'vertex_gaussian_curvature'

#57 ZeroDesigner closed 1 year ago
1
Troubleshooting MaSIF-site errors with "./data_prepare_one.sh" for multiple PDBs of my protein complex

#56 Vmoller9 opened 1 year ago
2
some questions about " compute_iface"

#55 pearl-rabbit opened 1 year ago
1
Can you share the reduce package? The link is invalid

#54 pearl-rabbit closed 1 year ago
0
How to get fingerprint description？

#53 pearl-rabbit opened 1 year ago
2
multivalue in apbs

#52 huanggewudi opened 1 year ago
16
The complex surface is generated in a confusing way.

#51 Ieremie opened 1 year ago
0
Pretrained model for the second stage alignment

#50 GoranM88 opened 1 year ago
0
i wonder how can i get the features list

#49 Ronaldo-longlong opened 1 year ago
2
I tried to use docker image & fastest and easiest way reproduce way.

#48 alack opened 1 year ago
0
docker run masif_ligand/data_prepare_one.sh meets error OSError: File not found: data_preparation/01-benchmark_surfaces//4ZQK_A.ply

#47 Lizeerd opened 1 year ago
3
Can not Download reduce software from your provide link

#46 miderxi opened 2 years ago
2
MaSIF-search second-stage issue

#45 OtaviaW opened 2 years ago
0
Whether a local pdb file as input possible?

#44 DaHenz closed 2 years ago
3
how to visualize the output files?

#43 jh4yd closed 2 years ago
2
how to get the protein list？download in PDB？ i can‘t find how to download the protein IDand chains

#42 Shrimp1437 opened 2 years ago
0
subprocess.py error while running data_prepare_one

#41 aleks-karolak opened 2 years ago
8
PyMol plugin slow

#40 fwaibl opened 2 years ago
0
Failed to place the graph without changing the devices of some resources

#39 geraseva opened 2 years ago
0
StrBioInfo problem

#38 tao840813 opened 2 years ago
8
How can I get per-residue predictions from masif-site?

#37 yuanqm55 opened 2 years ago
1
masif for small molecules

#36 frenkiboy opened 2 years ago
0
How can i docking two protein monomer by masif-search?

#35 wenyuhaokikika opened 3 years ago
1
Generating Geometric Data

#34 dmshah4 opened 3 years ago
0
Use PDB structures from modelling software like ITASSER

#33 anu-bioinfo closed 3 years ago
0
NameError: name 'read_point_cloud' is not defined

#32 wenyuhaokikika closed 3 years ago
2
masif_ppi_search struggles with rotated chains

#31 BrynMarieR opened 3 years ago
0