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cytoscape
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RCy3
New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
MIT License
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Check for Inf and -Inf in Double columns during loadTableData
#224
AlexanderPico
closed
2 weeks ago
1
Importing a graphNEL from 'GOstats' Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 'res' not found
#223
methornton
closed
1 month ago
11
WikiPathway arrows (Edges?) aren't aligned properly
#222
zcsharp101
closed
2 months ago
2
setNodeCustomHeatMapChart() Function
#221
zcsharp101
closed
2 months ago
11
Cannot Create network from graphNel/igraph object, generated from kgml
#220
Naadir-Ganief
opened
3 months ago
0
Cannot connect to Cytoscape via cyREST
#219
kaijagahm
closed
4 months ago
9
Installation dependency issue uchardet
#218
ammaralsheik
closed
6 months ago
3
Error in Pathway Analysis vignette
#217
mauritsunkel
closed
3 months ago
13
Cannot call mapVisualProperty without specifying a remote URL when Cytoscape is running locally
#216
taraeicher
closed
7 months ago
9
RCy3 recognizes Cytoscape 3.10 as 3.1
#215
magnuspalmblad
closed
8 months ago
1
Missing node label position and label position functions
#214
bdemchak
closed
7 months ago
2
Running RCy3 to import nested networks into cytoscape
#213
shagupta13
opened
8 months ago
2
No return value comes from the cytoscapePing function with the changed base.url parameter.
#212
kozo2
closed
9 months ago
4
openSession() fails with Cytoscape_v3.10.1 on debian v12
#211
rafalcode
closed
8 months ago
1
Use viridis color palette for continuous mapping?
#210
mattias-erhardsson
closed
3 months ago
1
StyleBypasses.lockNodeDimensions calls don't propagate base.url
#209
bdemchak
closed
10 months ago
0
getCurrentStyle and getNetworkName don't work with base.url specified
#208
risserlin
closed
11 months ago
7
loadTableData with numeric column but it becomes string in cytoscape desktop
#207
gmhhope
closed
1 year ago
4
Function to load the cytoscape-formatted json to RCy3?
#206
gmhhope
closed
1 year ago
3
The running version of CyREST has changed. CyREST requires a restart of Cytoscape to function correctly
#205
Peipenggang
closed
1 year ago
7
"Degree" calculation looks strange
#204
Guerande29
closed
1 year ago
1
Missing edge attributes in networks with multiple edges
#203
jd690764
closed
1 year ago
4
RBGL shortest path always giving path length NA and path_details NA
#202
mharoun20
closed
1 year ago
2
Fixed Typos
#201
meetagrawal09
closed
1 year ago
0
Creating a unit test suite for the R Package
#200
meetagrawal09
opened
1 year ago
3
broweURL() does not import KEGG pathways from KGML file
#199
delfarahalireza
closed
1 year ago
11
issue-1 passing network name as a string
#198
delfarahalireza
closed
1 year ago
0
issue-1 passing network name as a string
#197
delfarahalireza
closed
1 year ago
0
createNetworkFromGraph doesn't work on pathways from KEGGParser app
#196
AlexanderPico
closed
1 year ago
27
issue with function createNetworkFromDataFrames
#195
guidohooiveld
closed
1 year ago
5
update NEWS
#194
yihangx
closed
1 year ago
0
Question: How do create column filters using multiple arguments?
#193
veroniquevoisin
closed
1 year ago
2
mapping.type checks only work for single letter abbr
#192
AlexanderPico
closed
1 year ago
6
setNodeSizeMapping doesn't recognize base.url
#191
risserlin
closed
1 year ago
5
suggestion: selectEdgesAdjacentToSelectedNodes ; add nodes in function so we don't have to run selected nodes just before
#190
veroniquevoisin
closed
1 year ago
3
Optimization of RCy3 pipelines - avoid using network name or network suid in pipelines when creating many networks
#189
risserlin
closed
1 year ago
5
enhancement: setNodeColorBypass: List of hex colors
#188
veroniquevoisin
closed
1 year ago
4
New methods for cyjs use cases
#187
AlexanderPico
closed
1 year ago
14
sporadic error - Error in .cyFinally(res) : object 'res' not found
#186
risserlin
closed
1 year ago
6
Apply filter only to previously selected/filtered nodes
#185
pklemmer
closed
2 years ago
2
Incomplete propagation of base.url
#184
bdemchak
closed
2 years ago
2
network load file
#183
AlexanderPico
closed
2 years ago
1
Add importFileFromUrl as duplicate of sandboxUrlTo function
#182
yihangx
closed
2 years ago
4
faster selectAll* functions
#181
AlexanderPico
closed
2 years ago
0
add createView to NetworkView
#180
AlexanderPico
closed
2 years ago
0
mergeNetworks: Error: $ operator is invalid for atomic vectors
#179
veroniquevoisin
closed
1 year ago
8
updateAnnotationImage cleanup
#178
bdemchak
closed
2 years ago
1
updateAnnotationText cleanup
#177
bdemchak
closed
2 years ago
1
ungroupAnnotation cleanup
#176
bdemchak
closed
2 years ago
2
groupAnnotation cleanup
#175
bdemchak
closed
2 years ago
7
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