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- [ ] currently dynamo can use cell-wise alpha to calculate RNA velocity but it doesn't support cell-wise beta and gamma, support this
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Hi, would you mind explaining how you generate the "cell flows" based on RNA Velocity data in Supp. Video 6? Was it also done via Napari?
I have been using your repo to build 3D UMAPs of my lab's o…
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I'm opening this issue here because I believe it's more of a pufferfish-related matter, but will use the issue template from your salmon repository.
**Is the bug primarily related to salmon (bulk m…
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I'm currently working with your fantastic veloVAE tool and exploring the RNA velocity dynamics in my single-cell data. I'm keen on utilizing all of my genes for this analysis without filtering any out…
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Full reindex on DEV to test out the round 5 efficiency updates from Karl's changes, but encounter hundreds of such errors:
```
[2024-06-22 07:00:07] ERROR in es_writer:95: Failed to write doc of u…
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我想要运行velocyto,而华大仅返回了fastq文件和final.bam文件(约60GB),当我运行如下命令:
```
velocyto run --bcfile /home/chenzhizhuo/Data/keloid/ActK6/barcodes.tsv.gz --outputfolder ./velocyte/ActK6 /home/chenzhizhuo/Data/keloid/…
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https://mp.weixin.qq.com/s/auTt5OYQSEMoQWe1tqFNbw
ixxmu updated
4 months ago
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Hi, I'm trying to reproduce your analysis, particularly the Velocyto analysis. But unfortunately I don't understand where to get the spliced and unspliced RNA data in .loom format. Could you please te…
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Hey Volker,
I have a question regarding an analysis of Bone Marrow stem and progenitors compartment from heathy human samples.
![image](https://user-images.githubusercontent.com/29317258/77…
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TypeError: Neighbors.compute_neighbors() got an unexpected keyword argument 'write_knn_indices' when I try to run scv.pp.moments or scv.pp.neighbors on adata.
I'm a beginner with RNA velocity anal…