MGI-tech-bioinformatics DNBelab_C_Series_HT_scRNA-analysis-software issues

MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software

An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets

MIT License

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issues

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dnbc4tools rna run中断报错 Calculating bead similarity and merging beads

#131 anshrly closed 15 hours ago
1
Can I use NCBI to construct a reference genome

#130 xiaoying-codeLab opened 4 days ago
1
What is `output/attachment/RNAvelocity_matrix/spanning.mtx.gz` ?

#129 h4rvey-g closed 9 hours ago
3
如何在小鼠参考基因组基础上，构建一个带有EGFP基因或者其他非小鼠基因的参考基因组呢？How can we construct a reference genome with the EGFP gene or other non-mouse genes based on the mouse reference genome?

#128 XiaoRuipei2024edu closed 6 days ago
6
其他物种参考基因组的构建

#127 ASasasdasfasfasfasfasf opened 1 week ago
9
cDNA reads statistics bug?

#126 liufuyan2016 opened 1 week ago
9
Column C0 does not exist in the Frame

#125 kinesin80s opened 2 weeks ago
5
Can't find a usable init.tcl in the following directories:

#124 Rohit-Satyam opened 2 weeks ago
2
SATR options

#123 KeiichiroKOIWAI opened 2 weeks ago
2
subprocess.CalledProcessError #returned non-zero exit status 139

#122 binzhengbin opened 2 weeks ago
23
dnbc4tools 2.1.3 scATAC MACS2/IO/ScoreTrack...so: undefined symbol issue

#121 lishuangshuang0616 opened 1 month ago
0
2.1.3

#120 lishuangshuang0616 closed 1 month ago
0
单细胞数据结果文件

#119 ldan999 opened 2 months ago
5
scRNA run结果解读

#118 ldan999 closed 2 months ago
3
dnbc4tools installation issue

#117 ErrolTian opened 2 months ago
3
Running the main workflow报错

#116 ldan999 closed 2 months ago
8
细胞数目和质量都很高

#115 LJIGDBLL closed 2 months ago
5
关于dnbc4tools vdj run运行时间过长的咨询

#114 biginfor closed 2 months ago
10
How Does the Software Determine Beads Originate from the Same Cell?

#113 lgchen-git opened 2 months ago
3
dnbc4tools4下载报错

#112 ldan999 opened 2 months ago
2
dnbc4toolsv2.0.7 install

#111 qwccccc opened 2 months ago
1
Obtain transcript count matrics

#110 hejian41 opened 3 months ago
4
Concerns Regarding Differences Between V2.1.2 and V2.0.7 Pipelines

#109 nh-codem closed 3 months ago
2
建立参考基因组索引问题

#108 ldan999 closed 2 months ago
3
error: the following arguments are required: --name, --cDNAfastq1, --cDNAfastq2, --oligofastq1, --oligofastq2, --genomeDir

#107 ldan999 closed 3 months ago
2
构建参考基因组索引所需内存

#106 ldan999 closed 3 months ago
2
关于软件是否存在checkpoint机制的询问

#105 biginfor closed 3 months ago
4
Concerns Regarding "Sequencing Saturation" in the "DNBelab C4 scRNA-seq v2" Workflow Reports

#104 nh-codem closed 3 months ago
2
How to adjust `forceCellNum` for Optimal Cell Yield and Accuracy in the Pipline "DNBelab C4 scRNA-seq v2"

#103 nh-codem closed 3 months ago
3
dnbc4tools rna multi 不产生任何结果，但同时没有任何报错

#102 biginfor closed 3 months ago
2
C4单细胞上游分析样本存在多个文件

#101 ldan999 closed 2 months ago
6
如何使用 scanpy 读取 raw_matrix下的文件？

#100 zhoutianrui-tongji opened 3 months ago
4
Output matrix with gene_id

#99 ShuyangXu opened 3 months ago
1
来自不同分析版本的样品

#98 LJIGDBLL closed 2 months ago
2
SAW-A10186 中途自动终止并报错。

#97 LJIGDBLL opened 3 months ago
1
C4单细胞上游分析提问

#96 hswl1314 opened 3 months ago
2
请问如何将bam文件进行上游分析

#95 GGG622188 opened 3 months ago
3
ERROR - similarity: main.c:369: create_index_array: Assertion `((infos)->n) > 0' failed.

#94 yjzhang1020 opened 3 months ago
14
NoDataError: empty CSV

#93 peipp410 opened 3 months ago
6
dnbc4tools run 报错 Error code: SAW-A10187

#92 sheny-bio closed 3 months ago
8
add Custom gene to Reference, but filtered out in GTF file after mkgtf

#91 zclecle2 closed 3 months ago
4
DNBSEQ-T7 platform demultiplexing

#90 Maple-sakura opened 4 months ago
4
我该如何将结果文件读取到 python 中进行后续分析（包括 UMAP 和细胞类型注释）？（Scanpy）

#89 zhoutianrui-tongji closed 4 months ago
2
filter matrix 和 raw matrix有什么区别？

#88 ultraypy opened 4 months ago
3
A question about multiple files of one sample

#87 NJU-Bio-Info opened 4 months ago
9
Dnbc4 dev

#86 lishuangshuang0616 closed 5 months ago
0
How to add a marker gene for building a custom reference for dnbc4tools?

#85 jiangjasson closed 5 months ago
4
ImportError:undefined symbol: BrotliSharedDictionaryDestroyInstance

#84 jiangjasson closed 5 months ago
3
dnbc4tools rna run 的时候报错：Signals.SIGABRT: 6

#83 YaoQiong1127 closed 4 months ago
18
scATAC version 2.1.2 SIGNALS error description

#82 lishuangshuang0616 opened 5 months ago
7