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## Summary
The top of the brain is cut off after preprocessing using 0.22.0. The same dataset had full brain coverage after preprocessing using 0.19.1. Were there changes made to the image field of v…
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**What's the problem this feature will solve?**
Scientists who are processing tissues often consult a 2D atlas, and record their dissected areas based on an atlas plate (image in the series). When th…
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I am trying to use your SVRreconstructionGPU to reconstruction isotropic volume from 3 t2-tse volumes.
The data is from [Cancer imaging archive - PROSTATEx challenge](https://wiki.cancerimagingarchiv…
kaltu updated
5 years ago
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Hi there,
We are running fsl_topup_epi_eddy on our DWI data (108 directions, b-values from 5 - 3000 mm/s^2) with the following code:
fsl_topup_epi_eddy --imain $dwi_PA,$dwi_AP \
--mask $dwi_PA_…
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Hi all,
I am running a 3-step registration where I generate my own atlas averaging my data. I am using mice brain data acquired sagittally.
Practically, initially I do a rigid registration to the …
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The SNR map includes a bunch of padding and a colormap, which is useless for subsequent processing, and it makes it more difficult to analyze the QC report due to the small appearance of the image:
…
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Hello, i want to install this tool with pytorch 2.3.1, but fails because of the dependency coonflict. So how i install it with pytorch 2.3.x?
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The following changes to default visualization lead to better visuals (annotated for ease of implementation, impact smaller is better)
1. Adjust the camera's field of view (particularly helpful for…
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Thinking about the little red text characters indicating the three anatomical axes in `mrview`. Particularly given [recent work](https://github.com/Lestropie/DWI_metadata) on the importance of distinc…
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2.5D Architecture --> patch extraction performed from three anatomical planes.
Currently, we are only using patches extracted from the axial plane, which is optimal for axial data (e.g. T2-ax, T2st…