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pnlbwh
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pnlNipype
PNL pipeline for NIFTI images
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Python version
#114
AlbertoImg
opened
1 week ago
2
Updated instructions in README.
#113
RyanZurrin
opened
2 months ago
0
fsl_topup_epi_eddy Issue
#112
katerendall
opened
2 months ago
2
Generalize makeAlignedMask so it can be reused to register arbitrary image pairs
#111
tashrifbillah
opened
7 months ago
0
Eddy_openmp
#110
kavandeloo
opened
8 months ago
3
Revise ukf.py to catch grad_remove ValueError
#109
tashrifbillah
closed
10 months ago
1
Align any MRI with or w/o bval+bvec
#108
tashrifbillah
closed
10 months ago
0
cmd/install.py issue UKFTractography on Apple M2 Pro chip
#107
kavandeloo
closed
11 months ago
2
nifti_align error on Apple M2 Pro chip
#106
kavandeloo
opened
1 year ago
1
DIPY unringing no longer works parallely
#105
tashrifbillah
opened
1 year ago
0
Error building ANTs related to MD5
#104
katiev1997
opened
1 year ago
1
Installation Help
#103
loulou-99
opened
1 year ago
13
fixed spelling error
#102
RyanZurrin
closed
10 months ago
0
Updated script for tract qc
#101
twishipuri
closed
1 year ago
1
command not found while working through tutorial
#100
RyanZurrin
closed
1 year ago
1
extra z on the file extension
#99
RyanZurrin
closed
1 year ago
0
tutorial-pnl has path to slicer version that is no longer there
#98
RyanZurrin
closed
1 year ago
1
Needed to add --bvec and --bval arguments
#97
RyanZurrin
closed
1 year ago
1
Fixed small spelling error
#96
RyanZurrin
closed
1 year ago
1
Set a missing bvals file message in this block
#95
tashrifbillah
closed
1 year ago
1
Failed solving environment (gxx_linux-64 & gcc_linux-64)
#94
melissadifabio
closed
1 year ago
1
[BUG] Update antsRegistrationsyn.sh
#93
tashrifbillah
opened
2 years ago
1
Incorrect comments and variable names
#92
tashrifbillah
closed
2 years ago
0
Provide T1w in DWI space
#91
tashrifbillah
opened
2 years ago
0
wmparc in T1w space
#90
tashrifbillah
closed
2 years ago
1
Obtain out _dir- from input vols
#89
tashrifbillah
closed
2 years ago
0
Require acqp to have exactly two lines
#88
tashrifbillah
closed
2 years ago
0
Include process for FreeSurfer to anatomical space
#87
tashrifbillah
closed
2 years ago
0
recon-all -xmask
#86
tashrifbillah
opened
2 years ago
0
Hook up wo_repol_outDir removal to a --debug flag
#85
tashrifbillah
opened
2 years ago
0
GPU availability check for eddy cuda
#84
tashrifbillah
closed
2 years ago
0
Provide wmparc in subject space
#83
tashrifbillah
closed
2 years ago
0
Delete *.eddy_outlier_free_data.nii.gz
#82
tashrifbillah
closed
2 years ago
1
BIDS convention naming of topup+eddy corrected data
#81
tashrifbillah
opened
3 years ago
8
--repol for bvals>500
#80
tashrifbillah
closed
2 years ago
0
`applytopup --inindex` inaccurate for multiple b0s
#79
tashrifbillah
closed
2 years ago
5
More check required to determine usability of eddy_cuda
#78
tashrifbillah
closed
2 years ago
0
Update TUTORIAL-PNL.md
#77
justinec98
closed
3 years ago
0
Update TUTORIAL-PNL.md
#76
justinec98
closed
3 years ago
2
Update TUTORIAL-PNL.md
#75
justinec98
closed
3 years ago
1
TYPO
#74
tashrifbillah
closed
2 years ago
0
ANTSREG_THREADS is injurious to reproducibility, get rid of it
#73
tashrifbillah
closed
3 years ago
0
Add CNN masking install instruction
#72
tashrifbillah
closed
3 years ago
1
Omit wma install
#71
tashrifbillah
closed
3 years ago
0
Upgrade WMA to py3, omit PY2BIN variable concept
#70
tashrifbillah
closed
3 years ago
2
filter bval<=bhigh before tractography
#69
tashrifbillah
closed
3 years ago
1
[ENH] Accept space separated params
#68
tashrifbillah
closed
3 years ago
1
maskfilter--> nifti_maskfilter, otherwise clashes with mrtrix/maskfilter
#67
tashrifbillah
closed
3 years ago
0
align.py should not rotate bvecs
#66
tashrifbillah
closed
3 years ago
1
Small typo with documentation
#65
sbouix
closed
3 years ago
3
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