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The following exception is thrown in the `credentialsConfigJson` method. The error should be handled and an actionable error message should be returned
```
2024-08-05 22:07:08.426 20:07:08.424 […
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When using seqerakit, the feedback is low. It's not clear whether the tool has succeeded or failed correctly based on the logs. For example:
```
$ seqerakit ./seqerakit/pipelines/hello-world.yml
…
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The following exception should be managed better
```
024-07-25 13:50:17.691 11:50:17.691 [io-executor-thread-59] ERROR io.seqera.wave.ErrorHandler - Cannot invoke "java.util.Map.get(Object)" beca…
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In https://github.com/MultiQC/website/pull/66 I added a new page where you can run MultiQC in the browser, using WebAssembly.
It works ok, but there are some improvements that could be made:
- […
ewels updated
1 month ago
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### Description of the bug
Enabling the contaminant filter the pipeline fails when pulling the blat docker container quay.io/biocontainers/blat:36--0.
The container image seems to be broken:
`docke…
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The goal of this issue is to add a new endpoint that allow the retrieval of a container request meta-data.
The endpoint is defined as such
```
GET /v1alpha2/container/{token}
```
The resp…
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### Expected behavior and actual behavior.
When running `mirtop gff` with the same input files, the `mirtop.gff` file that is produced may have different md5sum. This is because the order of the co…
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Running `seqerakit --info` does not seem to respect the `--cli` or `--dryrun` flag. You can see it bypass the options here:
https://github.com/seqeralabs/seqera-kit/blob/60efe638b7649cdd3fe9ea144b566…
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Here is the build log: https://wave.seqera.io/view/builds/dded52ad814da816_1
I'm trying to build something with this package: https://github.com/MouseLand/cellpose
It appears that this container…
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Hi, I noticed this in the docs for seqera-kit
> Conda
> You can install seqerakit and its dependencies via Conda. Ensure that you have the correct channels configured:
> ```
> conda config --add…