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miRTop
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mirtop
command lines tool to annotate miRNAs with a standard mirna/isomir naming
https://mirtop.readthedocs.org
MIT License
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error when running mirtop gff example tesing
#81
ylang0825
closed
1 month ago
1
Repeated isomiRs in the `mirtop.tsv` output
#80
bounlu
opened
2 months ago
0
`BiopythonDeprecationWarning`: `Bio.pairwise2` has been deprecated, please consider using `Bio.Align.PairwiseAligner`
#79
bounlu
opened
9 months ago
1
Pandas update breaks mirtop stats
#78
jonahcullen
opened
1 year ago
0
gff from sRNAbench output - invalid literal error
#77
jonahcullen
opened
1 year ago
4
Compatible tool - Genozip (compression)
#76
divonlan
opened
1 year ago
0
please consider using a contemporary test engine
#75
emollier
opened
1 year ago
0
MirTop output changes depending on sample quality
#74
apeltzer
opened
1 year ago
2
mislabeled isomiR
#73
abartlett004
opened
2 years ago
0
attempt to fix missing keys in logs
#72
lpantano
closed
2 years ago
0
v0.4.24
#71
lpantano
closed
2 years ago
0
Fix bugs and add features
#70
lpantano
closed
2 years ago
0
wrong addition variants
#69
lpantano
opened
2 years ago
0
How to name miRNAs of species not included in miRBase
#68
zhaosq2022
opened
3 years ago
0
Error in the convertion of the gff files
#67
anna687
closed
4 years ago
4
Empty from sRNAbench output (genome mapped output)
#66
kicheolkim
opened
4 years ago
4
mirtop export to isomiRs
#65
DrHogart
closed
4 years ago
9
ref_miRNA is annotated as isomiR for dme-miR-6-3p
#64
DrHogart
closed
4 years ago
11
Dev
#63
arunhpatil
closed
4 years ago
1
fix empty stat file
#62
lpantano
closed
4 years ago
1
mirtop stats generates empty txt file
#61
leontienvdbent
opened
4 years ago
5
parsing from sRNAbench data (II)
#60
JFsanchezherrero
opened
4 years ago
3
integrate sqlite database
#59
arunhpatil
closed
4 years ago
2
release 0.4.22
#58
lpantano
closed
4 years ago
1
How can I get files like tagMir-all.gff?
#57
illumination-k
opened
4 years ago
1
Support sqlite database
#56
lpantano
opened
4 years ago
0
0.4.18 release
#55
lpantano
closed
5 years ago
0
Typo
#54
kkarolis
closed
5 years ago
1
parsing from sRNAbench data
#53
lsumoy
opened
5 years ago
10
Trailing Slash for samples
#52
JFsanchezherrero
closed
5 years ago
2
Python 3 support: use six for encoding and basestring
#51
chapmanb
closed
5 years ago
2
Python 3 support: use general fixes and six for 2 and 3 support
#50
chapmanb
closed
5 years ago
2
Create gff3_to_vcf.py
#49
Erispin
closed
5 years ago
1
Changing of license plates to MINTplates
#48
Unspec7
closed
5 years ago
2
feature json-log
#47
lpantano
closed
5 years ago
1
print as function for Python 3 transition
#46
smoe
closed
6 years ago
3
Python3 transition - print only
#45
smoe
closed
6 years ago
2
Lpantano style patch
#44
lpantano
closed
6 years ago
1
Lpantano patch docs
#43
lpantano
closed
6 years ago
1
Dev validator
#42
vbarrera
closed
6 years ago
0
Dev validator
#41
vbarrera
closed
6 years ago
0
integrate mirtop into #galaxy
#40
lpantano
opened
6 years ago
0
build docker automatically after a version is successfully finished.
#39
lpantano
opened
6 years ago
0
help with the header of sRNAbench
#38
lpantano
opened
6 years ago
0
Find bugs or unclear man pages in docs
#37
lpantano
opened
6 years ago
0
Fix crash if sRNAbench output contains NA instead of expected -
#36
i-mtz
closed
6 years ago
1
cross GFF with SNP information
#35
lpantano
opened
6 years ago
0
Add files via upload
#34
AlisR
closed
6 years ago
0
Add stats output to multiqc
#33
lpantano
opened
6 years ago
1
Add test units for import custom tools format
#32
lpantano
closed
4 years ago
0
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