issues
search
miRTop
/
mirtop
command lines tool to annotate miRNAs with a standard mirna/isomir naming
https://mirtop.readthedocs.org
MIT License
18
stars
21
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add test units for import custom tools format
#32
lpantano
closed
4 years ago
0
Integrate `join` sub-command to join multiple GFF files
#31
lpantano
closed
6 years ago
1
Issue#25 and Issue#18
#30
shruthibandyadka
closed
6 years ago
1
logo
#29
lpantano
closed
5 years ago
18
gff_2_exprcounts
#28
shruthibandyadka
closed
6 years ago
2
Conda install broken; cannot find python modules
#27
lsmainzer
opened
6 years ago
3
Add the option to accept GFF in `gff` subcomand
#26
lpantano
closed
6 years ago
0
Function to read column 9 of GFF and return key:values dict
#25
lpantano
closed
6 years ago
0
Accept `N` character for UID creation
#24
lpantano
closed
6 years ago
0
Function to parse queries and apply to the GFF file
#23
lpantano
opened
6 years ago
0
Implement DESeq2 like normalization
#22
lpantano
opened
6 years ago
2
Plot of isomiRs/miRNA distribution using ggplot-python
#21
lpantano
opened
6 years ago
8
Convert GFF to isomiRs input
#20
lpantano
closed
6 years ago
2
support ggplot style figures for stats command
#19
lpantano
opened
6 years ago
1
Add column to name the file during `stats` sub-command
#18
lpantano
opened
6 years ago
1
Convert to count matrix
#17
lpantano
closed
6 years ago
0
Merge next release
#16
lpantano
closed
6 years ago
0
Adapt to new GFF format
#15
lpantano
closed
6 years ago
0
Merge multiple samples into one
#14
lpantano
closed
6 years ago
0
Function to check GFF
#13
lpantano
opened
6 years ago
0
Support hits in the reverse strand of miRNA
#12
lpantano
opened
6 years ago
0
Add compatibility with other tools
#11
lpantano
opened
6 years ago
0
Add parameter to choose database
#10
lpantano
opened
6 years ago
0
function to create gff lines
#9
lpantano
closed
6 years ago
0
Add function and test unit for function to read BAM file
#8
lpantano
closed
6 years ago
0
add function and test unit to read hairpin.fa
#7
lpantano
closed
6 years ago
0
add function to read miRNA GTF file and get a dict as an output
#6
lpantano
closed
6 years ago
1
analyze human mirbase data as an example
#5
lpantano
opened
7 years ago
0
help with installation issues
#4
lpantano
closed
7 years ago
0
add travis support
#3
lpantano
closed
7 years ago
0
support blast/blat output format?
#2
lpantano
opened
8 years ago
0
change main naming format
#1
lpantano
closed
7 years ago
0
Previous