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(copied from https://github.com/apptainer/singularity/issues/6408)
(related to https://github.com/apptainer/singularity/issues/5329)
We don't have apptainer installed on our system yet.
```
…
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Container (docker, singularity, ...) became a standard in running software and workflows.
The question is how and whether they should be described via EDAM. I do not have a straight-forward answer…
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### Description of feature
[Filtlong]() and [Nanolyse]() are very time-consuming steps in the process for long-read/hybrid datasets, mainly because neither of them can be multi-threaded. [Chopper]() …
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Hi,
our HPC enforces unpacking singularity containers to sandboxes which takes a really long time if done multiple times in parallel. One way to circumvent unpacking all the time would be to use a …
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singularity run --nv /home/liux/miniconda3/envs/braker3/helixer-docker_helixer_v0.3.2_cuda_11.8.0-cudnn8.sif Helixer.py --fasta-path /home/liux/DATA/genomic/RepeatMasker/AT/TAIR10_chr_all.fa --lineag…
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# Issue: Environment not set
Since March, HTCondor jobs on lxplus do not have the CMSSW environment set correctly, nor `JOBID` or `TASKID` as defined in [`submit_HTCondor.sub`](https://github.com/cms…
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Hi,
In our containerized computational workflows, we have several applications containerized with Singularity (images written for OCI, built and then deployed to GitHub registry, and finally deploy…
kinow updated
11 months ago
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### Description of feature
Hello,
We've found that `nf-core download` doesn't know how to use `$NXF_SINGULARITY_LIBRARYDIR`(it only knows `$NXF_SINGULARITY_CACHEDIR`). Although the following shoul…
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The readme talks about converting conda environments to Docker containers but at the moment the tool seems focused on Singularity. Have I missed something?
@DRSEI
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Update Singularity and Docker scripts to be consistent with `riboviz/docs/user/install.md` and `riboviz/docs/developer/install.md` instructions as they are when RiboViz 2.1 is released.
Update `doc…