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#74 and #81 are similar cases, that the genomics variant (usually deletion) includes the end of a gene or transcript. Although we haven't seen it yet, but I think it'll also be an issue when the exon …
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I rebuilt all indexes using the latest main / dev branch, still seeing parser errors for fusion outputs
```
/FUSION/CPCG0183 …
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**Description of bug:**
The results of `junction_annotation.py `(from RSeQC) is not included in the MultiQC report.
**MultiQC Error log:**
There is no error, but the results from `junction_a…
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Hello,
I'm trying to get this running on our dataset which is a 10x STARSolo SJ run.
For some reason it's taking a long time (like 3 hours and doesn't finish)
```
psix_object = psix.Psix()
psix…
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First of all, thanks for such a great tool! Your job here is outstanding! I've been working with Chimeras in RNA-seq in my PhD and your tool is by far the most complete and comprehensive I've found so…
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Hello, I had a more general question about running ASGAL in genome-wide mode.
I have a dataset where I know there are 3 novel retained intron events. I was wondering if, after the pre-filtering st…
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How can I get a space(blank) it self in tokenizer vocab?
I am trying to finetune the stt_en_conformer_transducer_large model with grapheme in korean. I changed some code to load labels with chardata…
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I have run rMATS for 200 samples with read depth ranging from 2 million to 15 million
I find that [AS_Event].JC/JCEC.txt all genes have FDR and p-value of 1
Are my poor read depth samples corrup…
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Hi,
I have the following fusion reported with no split reads nor span reads support :
```
AGAP5 BMS1P4 -/- -/- chr10:73692043 chr10:73713332 CDS/splice-site exon/splice-site duplication 0 0 0 1…
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**Is your feature request related to a problem? Please describe.**
Requested by @PeerArts. Currently it's time-consuming to filter based on SpliceAI & most people don't know how to use it and/or aren'…
sksmi updated
3 years ago