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Hi Florian,
I have been trying to use LDpred2 recently and follow the instructions from your tutorial. I ran it successfully when I used your dataset, but some problems occurred when I turned to my…
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Dear Dr. Tian,
I have encountered the following issue while running the PRS-csx:
**$ python3 /home/PRScsx/PRScsx.py ....
--ref_dir=/home/PRScsx/
--bim_prefix=/home/genotype
--sst_file=['/ho…
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I hope this issue is not completely inappropriate to report here.
We've now been trying for a couple of days to run regenie on the UKB-RAP platform with Genomics England imputed genotypes (data fie…
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Hello!
Thank you for a great package!
When I am using region_plot(), if the second dataset has no genome-wide significant hits, a red 'a' appears in the plot legend.
Could you help me with …
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I would appreciate your advice on the following issue.
I am using FaST-LMM to estimate epistatic interactions using the GitHub code's own demo SNPs. However, unlike the table presented in https://…
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### Data Owner Name
Analytic and Translational Genetics Unit, Massachusetts General Hospital and the Broad Institute
### What is your role related to the dataset
Data Preparer
### Data Own…
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hey @sjgosai.
Do we have an example python script of the datapreprocessing mentioned in paper?
basically going from the encode files for MPRA to supplementary table 2 (SupTable 2 - UKBB_GTEX_CODA_…
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Hi - thanks for making these data and code available. I have installed PRSice and cloned the repository, Using the code snippet that you posted here, I tried to run PRSice. Howver, it seems the summar…
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Ticket to track various v4.1 data loading / update requests
### Loading requests:
- [x] #1439 | (@phildarnowsky-broad) Update code parsing SV and CNV files to accommodate updates, including update…
ch-kr updated
4 months ago
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Hi, thank you for developing this package, it's by far the best I've found.
I am trying to make two manhattan plots in one. Similar to the final plot in your manhattan vignette (https://totajuliusd…