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getian107
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PRScsx
Cross-population polygenic prediction
MIT License
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Time consuming and low computing resource used
#62
caozilongsuper
opened
1 day ago
2
Output meta=True
#61
patinolr
opened
2 days ago
3
How do I get a list of SNPs with MAF less than 0.01 in the reference data
#60
YangRT11
closed
1 week ago
2
Which output file should be selected to build the PRS if there are no validation samples?
#59
YangRT11
closed
2 weeks ago
3
How to get P value?
#58
YangRT11
closed
2 weeks ago
3
UnboundLocalError: cannot access local variable 'ref_dict' where it is not associated with a value
#57
YangRT11
closed
2 weeks ago
2
Applications in different populations
#56
JhGodluc
closed
2 weeks ago
4
Error running the test dataset
#55
kruthikaiyer0990
closed
3 weeks ago
0
PRS-CSx has been running for days
#54
mpkol59
closed
3 weeks ago
2
Parallel computation with PRScsx-auto causes diverse shrinkage parameters
#53
Xi-Cao
closed
1 month ago
2
SUM_STATS file cannot be CSVs based on parse_sumstats function
#52
chen70335
closed
1 month ago
1
How to input "VALIDATION_BIM_PREFIX (required)"
#51
Xi-Cao
closed
1 month ago
3
How to use the `--auto` option in PRS-CSx?
#50
goodluckncb
closed
1 month ago
3
How to Choose Validation and Testing dataset
#49
ciel1021
closed
2 months ago
3
KeyError
#48
AnjeGrobler
closed
6 months ago
5
KeyError: '\x1a\x1a\x1a\x1a\x1a\x1a\x1a\x1a\x1a\x1a\x1a\x1a\x1aC'
#47
sahwa
closed
7 months ago
5
LD thinning requirement?
#46
YujianLiang
closed
9 months ago
1
KeyError: 'FRQ_EUR'
#45
Yunqihuang971116
closed
9 months ago
1
how to get the final snp weight?
#44
nbj25
closed
9 months ago
9
The UKB Reference is GRCh37?
#43
koujiaodahan
closed
9 months ago
5
How to get the avaliable snp list used in auto-prs module
#42
koujiaodahan
closed
9 months ago
4
KeyError
#41
AnjeGrobler
closed
10 months ago
7
How to get to the final PRS value
#40
lcstoshio
closed
11 months ago
4
combine the PRS estimates from different ancestries
#39
sevi2018
closed
10 months ago
1
Reference Genomes and LD
#38
brunomiwa
closed
11 months ago
1
Error: cannot access local variable 'ref_dict' where it is not associated with a value
#37
nzernov01
closed
11 months ago
3
error "not reading the --n_gwas parameter"
#36
sevi2018
closed
11 months ago
2
..
#35
Reta-Dewau
closed
1 year ago
0
PRScsx
#34
Reta-Dewau
closed
1 year ago
1
Optimal choices of tuning parameters for traits with heritability
#33
harryyiheyang
closed
1 year ago
1
summary staticstic SNP information
#32
SheaCheng2000
closed
1 year ago
4
Please specify the directory bim file
#31
adrianalori17
closed
1 year ago
2
coordinate input
#30
SheaCheng2000
closed
1 year ago
2
Parallel processing
#29
fastforward35
closed
1 year ago
1
Getting error when using PRScsx
#28
ShoaibBME
closed
1 year ago
16
GWAS Sample Size
#27
jacklin9703
closed
1 year ago
2
Performance improvements?
#26
mglev1n
closed
3 weeks ago
1
Estimating PRS uncertainty
#25
mglev1n
closed
3 weeks ago
2
local variable 'ref_dict' referenced before assignment
#24
ghousen
closed
1 year ago
0
Error reading my summary statistics
#23
BasilioCieza
closed
1 year ago
1
Loading python libraries
#22
BasilioCieza
closed
1 year ago
2
B38 References
#21
BEFH
closed
1 year ago
1
2 summary statistics with the same population
#20
milo2992
closed
2 years ago
5
A follow-up tutorial on calculating polygenic score
#19
fys666
closed
2 years ago
2
run on chrX?
#18
lkachuri
closed
2 years ago
3
unboundlocalerror: local variable 'ref_dict' referenced before assignment
#17
forevertl
closed
2 years ago
1
setting mcmc iterations reverts to default
#16
rmandla
closed
3 years ago
2
Computation time and memory requirements
#15
opain
closed
3 years ago
2
Re: Output
#14
ttumkaya
closed
3 years ago
6
Is PRS-CSx for one population equivalent to PRS-CS?
#13
mkelcb
closed
3 years ago
2
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