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Hi there,
I was trying to calculate the TSS enrichment score using signac version 1.11 by adding an extension up to 2000 bp from TSSs. I see that the results produced have a high enrichment value (up…
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Could be downstream of https://github.com/tidyomics/genomics-todos/issues/1
Work through multi-sample multi-condition differential test using pseudobulked counts, a la a hybrid of `muscat` and `csaw`
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Thanks for your excellent software, thus making it possible for us to derive CNVs based on scATAC-seq data. After reading your code and introduction, I still have the following questions:
1 If I have…
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* link to support ticket: [#2024082260001072](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=165611)
* website: https://github.com/elo-nsrb/Cellformer
* installation docs: h…
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**Attach your log file**
[ArchR-addReproduciblePeakSet-3912e6e2aaa-Date-2022-09-02_Time-06-30-34.log](https://github.com/GreenleafLab/ArchR/files/9481904/ArchR-addReproduciblePeakSet-3912e6e2aaa-Date…
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Hey,
thanks a lot for your package. It is very useful:).
I'm currently working with a multiome dataset for which I want to calculate gene scores for the ATAC data to compare them to the gene expre…
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Hi,
I'm using Signac regularly but since last week as soon as I want to use the coverageplot function, R freezes and I have to quit Rstudio and restart it.
I tried to reinstall all the package…
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Hi,
I've tried running scATACpipe and while this time it started without issues, the cutadapt has timed out. I've included my nextflow.log for your convenience as I'm not sure why it was taking so lo…
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Hi
Thanks for the great tools for multiome dataset. we have some questions about the running this tool.
1. We have multiome data with 270K cells. we would like to run Scenic+ on ours. Could you …
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While actually trying to use Symbion for things, I find myself very annoyed with the need to present to angr a full copy of the environment, only to have it generally ignored in favor of the concrete …