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I am in the process of adding level 3-5 profiles to this repo (using git lfs). I will use this issue to document various questions I have about the process.
1. Confirm what the levels actually are!…
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sudo apt-get install build-essential checkinstall python-setuptools
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I am working towards processing all Drug Repurposing data and adding the results in this repository. The cell health project (https://github.com/broadinstitute/cell-health) now requires that the data …
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install_github fails with
```
> install_github("cytomining/cytominer")
Downloading GitHub repo cytomining/cytominer@master
Installing 2 packages: caret, ModelMetrics
Installing packages into ‘…
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I will note here a couple of things that I could not get through while trying to reproduce this analysis
1. Call to `process.sh` in [`analysis_log.sh`](https://github.com/broadinstitute/2015_07_01_…
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As I am reproducing this analysis, I noticed particularly high `null_threshold` values across cell lines. Specifically:
| | plate_map_name | null_threshold | fraction_strong | Metadata_cell_line
|…
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Run a couple of experiments in a Cell Painting dataset and found that under the same configuration, they perform significantly different (50% vs 58% accuracy). The main difference between both experim…
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These are the counts of cell lines across the full dataset (n=308 in total because some lines are repeated across plates)
|Metadata_Plate | n|
|:---------------------|--:|
|BR00106708 …
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This parameter supports the batch creation, but is not parameterized. Is this really required?
Also, the `batch_size` parameter in the configuration file seems to refer to number of images instead …
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- [x] Update the [wiki](https://github.com/cytomining/cytominer-database/wiki/Release) with instructions to update [`doc/conf.py`](https://github.com/cytomining/cytominer-database/blob/61af4a4ce846461…