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Hi everyone!
I'm super new to neuroimaging and just learning the ropes at the moment. The version of fmriprep-docker I'm using is 1.2.6 but the same problem did arise with 1.2.5.
So I'm also tr…
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Hello,
I'm trying to use the toolbox with my physio data recorded not by the scanner, but by the additional software called Spike2. The data I get is the trigger times, analog respiratory signal, …
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The ALFF module in xcpEngine used FSL `fslpspec` to get the power spectrum density of the time series. Outputs from `fslpspec` are n volumes (n = N/TR, with N being the number of time points), each vo…
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Hi all,
I am testing using fMRIprep to preprocess my fMRI data. In my first try, everything looks good. But today, when I ran them again, I met the problem related to RepetitionTime. The key 'Repetit…
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Lea will fix the issue of the T1 white matter and CSF segmentation (/nipype/sub_XXX/T1w/mni_seg/highres001_BrainExtractionBrain_seg_trans.nii.gz) not being in the correct coordinate space (FSL MNI 2mm…
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The standard way to use ICA-AROMA with non-aggressive denoising in conjunction with other confounds in the tsv (specifically acompcor, tcompcor, and other measures derived from the bold), is to pull o…
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Hello, I have received following error while running fmriprep-docker:
as : "fmriprep-docker --fs-license-file $FREESURFER_HOM /Users/.../Desktop/BIDS/Test_data/sub-001 /Users/.../Desktop/BIDS/Tes…
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I'm processing some fMRI data using the singularity distribution of NIAK_cog-1.1.3 and I am consistently running into an error at the nu_correct stage for the anatomical T1 volume. This may be similar…
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```
singularity run /lus/theta-fs0/projects/AD_Brain_Imaging/app/poldracklab_fmriprep_latest-2018-05-17-12b9eed9cd9e.img \
/lus/theta-fs0/projects/AD_Brain_Imaging/anal/EMBARC/image03/bids/ \
/lus/…
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Can we do brain extraction of 4d fmri data in nilearn?
if not, kindly suggest me a good tool for this.