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Hello,
I pulled the BeatAML cohort with code as below and noted even the healthy/normal controls have annotations such as `tumor_stage`, see the `kable` below. That does not make much sense which i…
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https://mp.weixin.qq.com/s/CKe0oJgHU9q_Kf20Ehbmwg
ixxmu updated
2 years ago
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Hello :)
I have a question regarding the dimensions of the data loaded at each epoch from the dataloader. Since the GDC Data Portal seems to be down, I cannot download any data to run an example. My …
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It doesn't seems that TCGAutils supports protein expression file's information.
If I use UUIDtoBarcode for a protein expression file id (43864799-84c0-4c4b-8056-b3571c3e135b), I got the error messa…
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This is what I see in the test tier:
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Unable to load the full CMap data (just the CMAPsmall example)
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https://mp.weixin.qq.com/s/6-5UG7F05uB0Aco0LCs-Ng
ixxmu updated
2 years ago
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#### What data file(s) does this issue pertain to?
TCGA RNA-seq merged and collapsed counts and tpm expression matrices.
Because we are not harmonizing TCGA RNA-seq data, I downloaded the dis…
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https://mp.weixin.qq.com/s/zTN32UA6Nu6PMmqXYTOnnQ
ixxmu updated
2 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/gevaertlab/EpiMix.data
Confirm the following by e…