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Hi,
If I have a series of interchromosomal translocation events stored in .vcf file, can I construct a graph that represent this kind of variants using vg ? If vg cannot solve this problem, can o…
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Hello!
I'm building a ctat_genome_library in preparation to run STAR-Fusion, but I came across an error when I ran "prep_genome_lib.pl". It ran into an issue when trying to run "index_pfam_domain_…
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Dear,
We are validating a capture based RNA Seq approach in order to detect fusions.
We are really satisfied about the output STAR-fusion generates.
For a clinical point of view, it would be hel…
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Hi,
I have some questions on how to interpret the output of the splicing module and prioritize identified alterations.
First, I want to confirm that any alterations reported by the splicing modu…
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Hi, there! I have used the stringtie2 to the genome-based transcripts assembly. I used the hisat2 to do the alignment of the RNA-seq data , and then the picard the remove the PCR errors. Finally, used…
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hi brian,
i can't find some parental gene in GeneBank or other website, for example :'AC092691.1'
here is my result
![image](https://user-images.githubusercontent.com/110949514/185785186-d30e14…
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I am able to run all the code but not able to interpret the output and make any conclusion from it. I checked the FuSeq manual but the output of FuSeq-WGS seems bit different from the FuSeq.
Can yo…
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hi,
fusion names of my output of star-fusion like these below. I am a beginner about this analysis and I wonder that what the "@" and "ext" mean in these names? could you give some paper or tutoria…
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Just noticed a sample that preferred the pseudogene fusion FGFR3--AC016773.1 over FGFR3--TACC3. These are overlapping gene definitions, and the breakpoint occurs in the middle of a shared exon, so th…